Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso14g0597 ATGGCACTCTCTTTGACATCTAATGGGGTCAATGAGTACCAAAAATGTGTGGTTGAAGAGGAAGATGGCTCACAAAGTACTAATGGGCTCAGCAATGATTCAGCTTCAGCCATAACCAATTCTCCTCCTCTATGTGGCAATGAGTATGTTCATAAGAGCACACATTACCAACTTGAAGAAGCAGAATCCCTGATTAATTTCAAAGCCAATGATCAATACAACAACCTCATGCAAGGTAGTGAATCTTTTCTTAGCTTTCAGCAGAGTTGGATGTTCTCCAAAGAGAGTAATTTGCATGAAGGTTATAACCAGTGGAACCATGTTATTAGTCCTAAAAGCCCCACAGATATGCGCCTAGTGCAAAATTTCAGTTGCTTTGAAACAGCCACTGGCTATAGCTCCATATTCAATGGTGCAAAAGACAAGCAACATGGTGAAAGTTCATCATCTGGGTGGCTATACTCTGAACCAAATGTCCCTAGTGATAGCTTGCATGAGTCAGCAGCACAAGAATTGGTCTTGAAAAAGCGCTCTTTTATGGGAGAGAACATGCAAGTTACCAATGCCAAGAAGCCATGCACAAGTGCAAGTAAAGCAGCAAAACCAAAGTCAAACCCATCCCAGGATCCTCAAAGTGTTGCTGCCAAGAATAGAAGAGAGAGAATAAGTGAGCGGCTTAAGATACTACAAGAACTGGTCCCCAACGGTTCCAAGGTTGATTTGGTCACAATGTTGGAGAAAGCAATTAGTTATGTGAAGTTTCTTCAGTTGCAAGTGAAGGTGTTGGCAGCTGATGAATTTTGGCCAGTCCAAGGTGGAAAAGCTCCTGACATTTCTCAAGTGAGACAAGCCATTGATGCCATTCTTTCATCTCAAAGATGA 882 0.4206 MALSLTSNGVNEYQKCVVEEEDGSQSTNGLSNDSASAITNSPPLCGNEYVHKSTHYQLEEAESLINFKANDQYNNLMQGSESFLSFQQSWMFSKESNLHEGYNQWNHVISPKSPTDMRLVQNFSCFETATGYSSIFNGAKDKQHGESSSSGWLYSEPNVPSDSLHESAAQELVLKKRSFMGENMQVTNAKKPCTSASKAAKPKSNPSQDPQSVAAKNRRERISERLKILQELVPNGSKVDLVTMLEKAISYVKFLQLQVKVLAADEFWPVQGGKAPDISQVRQAIDAILSSQR* 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso14g0597 293 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 15 291 - -
Gso14g0597 293 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 208 265 IPR036638 GO:0046983
Gso14g0597 293 Gene3D - 202 263 IPR036638 GO:0046983
Gso14g0597 293 CDD bHLH_AtIND_like 207 269 - -
Gso14g0597 293 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 206 255 IPR011598 GO:0046983
Gso14g0597 293 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 15 291 - -
Gso14g0597 293 SMART finulus 212 261 IPR011598 GO:0046983
Gso14g0597 293 MobiDBLite consensus disorder prediction 186 218 - -
Gso14g0597 293 MobiDBLite consensus disorder prediction 186 213 - -
Gso14g0597 293 Pfam Helix-loop-helix DNA-binding domain 216 256 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso14g0597 Gso-Chr14 5837411 5839252 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso14g0597 58 291 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G37800 48.571 2.24e-63 200
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gso14g0597 HLH 1.3e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso14g0597 - - gmx:106795957 585.489
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso14g0597 14 5837411 5839252 Gso2g2100 2 45611759 45613603 GST
Gso18g0345 18 3263014 3264820 Gso14g0597 14 5837411 5839252 PCT
Gso13g1271 13 28001402 28003392 Gso14g0597 14 5837411 5839252 PCT
Gso14g0597 14 5837411 5839252 Gso18g0345 18 3263014 3264820 PCT
Gso14g0597 14 5837411 5839252 Gso13g1271 13 28001402 28003392 PCT