Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso14g0593 ATGCCCTTAATATTATCCTATCACCAAAAAATTAAAAAAAAAAAAATACAAACAAAAGAGTCATCACCAACAACAATACAGCAAAACCACCAGTCCAAGTCAAAATATATCCCACCCTTCATCCTCACTCCTTTACAAGTATATATCTTACCTTTCCTCTGCATTTTGTCAGGGCTTCTACTCTCTTTTCCCCTCTCTCTCTCCAGATACATTTCTAGCCTTTCGTTTGCCTCAAACATGCACCCACACGAGCACACCCAGCAGGTACAAAAGGTGGAGTTCACAACAAAAAAGAAAACAATGAGAAAACCTTGTTGTGACAAGGAAAGCATAAATAAAGGTGCTTGGTCCAAGCAAGAAGACCAAAAGCTCATTGACTACATCCGAGTTCATGGTGAAGGCTGTTGGCGTTCCATTCCCAAAGCTGCTGGGCTGCATCGTTGCGGCAAAAGCTGTAGGCTGAGATGGTTAAACTACTTACGACCAGACATCAAACGTGGAATCTTTGCTGAAGATGAGGAAGACCTCATCATCAAACTCCATGCCCTCCTTGGTAACAGGTGGTCACTAATTGCTGGAAGGTTGCCTGGGAGGACAGACAATGAGGTGAAGAACTATTGGAATTCTCACATCCGAAGAAAACTAATAAAGATGGGAATTGATCCAAATAACCATAAGCCACACCAAAGCTTCCCTCGTTCTCATGCTTCAACTGAGGGTGCATCAACATCTGAGTCCATGAACAAAGTCCCTTTCTTCAAATCCAGTGGTGTAGCTGCCAGTGATCATAGGATTTCGTTCACAAAAGAAGAAACAGCAATTATTTCATCTTCATCACCCCCTTTGAATCTTGATCTTACAATTGCTTTACCTTCGCCTATGCTTCGTGCTGCGGAAGAATAA 903 0.4219 MPLILSYHQKIKKKKIQTKESSPTTIQQNHQSKSKYIPPFILTPLQVYILPFLCILSGLLLSFPLSLSRYISSLSFASNMHPHEHTQQVQKVEFTTKKKTMRKPCCDKESINKGAWSKQEDQKLIDYIRVHGEGCWRSIPKAAGLHRCGKSCRLRWLNYLRPDIKRGIFAEDEEDLIIKLHALLGNRWSLIAGRLPGRTDNEVKNYWNSHIRRKLIKMGIDPNNHKPHQSFPRSHASTEGASTSESMNKVPFFKSSGVAASDHRISFTKEETAIISSSSPPLNLDLTIALPSPMLRAAEE* 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso14g0593 300 MobiDBLite consensus disorder prediction 222 246 - -
Gso14g0593 300 SUPERFAMILY Homeodomain-like 111 207 IPR009057 -
Gso14g0593 300 Pfam Myb-like DNA-binding domain 168 210 IPR001005 -
Gso14g0593 300 Pfam Myb-like DNA-binding domain 113 160 IPR001005 -
Gso14g0593 300 ProSiteProfiles Myb-like domain profile. 108 160 IPR001005 -
Gso14g0593 300 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 102 296 - -
Gso14g0593 300 CDD SANT 115 160 IPR001005 -
Gso14g0593 300 MobiDBLite consensus disorder prediction 227 246 - -
Gso14g0593 300 PANTHER MYB TRANSCRIPTION FACTOR 102 296 - -
Gso14g0593 300 SMART sant 112 162 IPR001005 -
Gso14g0593 300 SMART sant 165 213 IPR001005 -
Gso14g0593 300 CDD SANT 171 211 IPR001005 -
Gso14g0593 300 Gene3D - 168 239 - -
Gso14g0593 300 Gene3D - 113 165 - -
Gso14g0593 300 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 165 215 IPR017930 -
Gso14g0593 300 ProSiteProfiles Myb-like domain profile. 161 211 IPR001005 -
Gso14g0593 300 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 108 164 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso14g0593 Gso-Chr14 5781186 5783472 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso14g0593 102 296 MYB Transcription Factor Family AT4G38620 54.286 2.61e-77 235
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gso14g0593 Myb_DNA-binding 1.7e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso14g0593 K09422 - gmx:100793444 582.793
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso14g0593 14 5781186 5783472 Gso2g2106 2 45660400 45662370 GST