Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso14g0588 ATGCGGCGGAACAGTCCAGCATACTACAGTCCTCCGCGGCGAGGATACGGTGGCGGTGGCCGAGGAGGAGGGTCCGGCAGGAGGGGATTCGGTGGAGGCAGGCGCAGGGACAGCAATGGGAGCCTCTTGGTTCGTAACATTCCCCTCGATTGCAGACCCGAGGAGCTTCGCGTCCCTTTCGAACGATTCGGGCCTGTTCGTGATGTTTACATACCCAAGGATTATTATTCTGGAGAACCTCGAGGCTTTGCATTTGTGCAGTTTGTGGATCCTTATGATGCCTCAGAGGCACAGTACCATATGAACAGACAGATTTTTGCTGGAAGGGAAATATCTGTAGTTGTGGCTGAAGAGACAAGAAAAAGACCAGAGGAGATGCGCCACAGGACTAGTAGGTTCAGAGGACCAGCAAGCTATGGAGGCCGAAGGTCTTCTCATTACGGGCGTTCTCGATCTCGCTCAATTACCAGATCACGCTCGCCACCTTATCACTCTGGTTCTAGAAATCGATATCGCTCAAGGTCCTATTCTCCTGCTCCAAGACGACAAAGCGATTACTCTGTTTCCCCTGGGAGGCAAGCTGAGCACCCCAGATCACCAAGAGGTCCTCCCAGGGAGAAGGATGGTGATCAAAAGCGTAGGTCTTATTCTCCTGCTTATGGCAATGGTATCGAACAGAATCAAAGCAATGGATATGCTGAGAAATCTATGTACAAGTCTGAGGCTGATGCTGATCGTAGCCAGTGGAAGTCATCGAGATCACCCCCTGGATCTAGATCAAGATCTGCTGAATTGTCACCAAGGCGTGGAAGATGA 816 0.5147 MRRNSPAYYSPPRRGYGGGGRGGGSGRRGFGGGRRRDSNGSLLVRNIPLDCRPEELRVPFERFGPVRDVYIPKDYYSGEPRGFAFVQFVDPYDASEAQYHMNRQIFAGREISVVVAEETRKRPEEMRHRTSRFRGPASYGGRRSSHYGRSRSRSITRSRSPPYHSGSRNRYRSRSYSPAPRRQSDYSVSPGRQAEHPRSPRGPPREKDGDQKRRSYSPAYGNGIEQNQSNGYAEKSMYKSEADADRSQWKSSRSPPGSRSRSAELSPRRGR* 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso14g0588 271 SUPERFAMILY RNA-binding domain, RBD 37 145 IPR035979 GO:0003676
Gso14g0588 271 SMART rrm1_1 41 114 IPR000504 GO:0003723
Gso14g0588 271 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 23 269 - -
Gso14g0588 271 MobiDBLite consensus disorder prediction 1 41 - -
Gso14g0588 271 MobiDBLite consensus disorder prediction 119 271 - -
Gso14g0588 271 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 42 111 IPR000504 GO:0003723
Gso14g0588 271 PANTHER OS02G0252100 PROTEIN 23 269 - -
Gso14g0588 271 MobiDBLite consensus disorder prediction 220 235 - -
Gso14g0588 271 MobiDBLite consensus disorder prediction 154 190 - -
Gso14g0588 271 MobiDBLite consensus disorder prediction 198 214 - -
Gso14g0588 271 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 40 118 IPR000504 GO:0003723
Gso14g0588 271 Gene3D - 33 175 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso14g0588 Gso-Chr14 5735430 5739002 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso14g0588 7 102 Eukaryotic Initiation Factors Gene Family AT3G11400 38.542 1.14e-07 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso14g0588 K12900 - gmx:100792397 471.085
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso14g0588 14 5735430 5739002 Gso2g2111 2 45705970 45709522 GST