Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso14g0583 ATGGCTTTGGTTAACCTTTCTTACATCGGCATTGTGACCCTTATAACCCTTCTGGCTTCCACCGAGGCCAGGGTCCCGGGCGTGTACAGCGGCGGCGCGTGGGAGACCGCGCACGCCACGTTCTACGGCGGCAGCGACGCGTCGGGGACAATGGGCGGCGCGTGCGGGTACGGGAACCTGTACAGCCAGGGGTACGGCGTGAACACGGCGGCGCTGAGCACGGCGCTGTTCAACAACGGGCTGAGCTGCGGTGCCTGCTTCGAGATAAAGTGCGCGAACGACCCCAGCTGGTGCCACGCTGGCAGCCCCTCCATATTCGTAACCGCCACAAACTTCTGCCCCCCAAACTACGCCCTTCCGAACGACAATGGAGGGTGGTGCAATCCTCCCCGGCCCCACTTCGACCTGGCCATGCCCATGTTCCTCAAAATCGCTCAGTACCGCGCCGGCATCGTCCCCGTCTCTTACCGCAGGGTGCCTTGCCGTAAGCAGGGAGGGATGAGGTTCACGATCAACGGCTTCCGTTACTTCAACCTGGTTTTGATCACCAACGTCGCGGGCGCAGGGGATATCGTGAGGACGAGCGTGAAAGGGTCAAAGACTGGGTGGATGAGCATGAGCCGCAACTGGGGTCAGAACTGGCAGTCAAACGCTGTTCTGGTTGGTCAGTCACTCTCCTTCAGGGTCACAGCCAGTGACCGACGCACCTCCACCTCCTGGAACATTGTACCCGCCAATTGGCAATTTGGTCAAACATTCACCGCCAAAAATTTCAGAGTCTAA 783 0.599 MALVNLSYIGIVTLITLLASTEARVPGVYSGGAWETAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFEIKCANDPSWCHAGSPSIFVTATNFCPPNYALPNDNGGWCNPPRPHFDLAMPMFLKIAQYRAGIVPVSYRRVPCRKQGGMRFTINGFRYFNLVLITNVAGAGDIVRTSVKGSKTGWMSMSRNWGQNWQSNAVLVGQSLSFRVTASDRRTSTSWNIVPANWQFGQTFTAKNFRV* 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso14g0583 260 PANTHER EXPANSIN-A15 7 259 IPR002963 GO:0009664
Gso14g0583 260 PRINTS Expansin signature 64 78 IPR002963 GO:0009664
Gso14g0583 260 PRINTS Expansin signature 91 102 IPR002963 GO:0009664
Gso14g0583 260 PRINTS Expansin signature 105 115 IPR002963 GO:0009664
Gso14g0583 260 PRINTS Expansin signature 124 141 IPR002963 GO:0009664
Gso14g0583 260 PRINTS Expansin signature 141 154 IPR002963 GO:0009664
Gso14g0583 260 PRINTS Expansin signature 165 177 IPR002963 GO:0009664
Gso14g0583 260 PRINTS Expansin signature 177 198 IPR002963 GO:0009664
Gso14g0583 260 PRINTS Expansin signature 212 233 IPR002963 GO:0009664
Gso14g0583 260 PRINTS Expansin signature 241 257 IPR002963 GO:0009664
Gso14g0583 260 Gene3D - 167 258 IPR036749 -
Gso14g0583 260 SMART dpbb_1 69 156 IPR007112 -
Gso14g0583 260 SUPERFAMILY PHL pollen allergen 163 254 IPR036749 -
Gso14g0583 260 Pfam Lytic transglycolase 69 156 IPR009009 -
Gso14g0583 260 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 176 255 IPR007117 -
Gso14g0583 260 PRINTS Expansin/Lol pI family signature 33 48 IPR007118 GO:0005576
Gso14g0583 260 PRINTS Expansin/Lol pI family signature 51 69 IPR007118 GO:0005576
Gso14g0583 260 PRINTS Expansin/Lol pI family signature 73 91 IPR007118 GO:0005576
Gso14g0583 260 PRINTS Expansin/Lol pI family signature 149 165 IPR007118 GO:0005576
Gso14g0583 260 PRINTS Expansin/Lol pI family signature 203 217 IPR007118 GO:0005576
Gso14g0583 260 PRINTS Expansin/Lol pI family signature 241 255 IPR007118 GO:0005576
Gso14g0583 260 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 52 166 IPR007112 -
Gso14g0583 260 PANTHER EXPANSIN-A6 7 259 - -
Gso14g0583 260 SUPERFAMILY Barwin-like endoglucanases 33 184 IPR036908 -
Gso14g0583 260 Gene3D - 20 162 IPR036908 -
Gso14g0583 260 Pfam Expansin C-terminal domain 167 244 IPR007117 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso14g0583 Gso-Chr14 5691233 5693727 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso14g0583 11 260 Expansin Gene Family AT2G39700 84.800 1.14e-165 457
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso14g0583 - - gmx:100809018 548.51
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso14g0583 14 5691233 5693727 Gso2g2117 2 45754527 45756866 GST
Gso18g0331 18 3130452 3132480 Gso14g0583 14 5691233 5693727 PCT
Gso13g1284 13 28170444 28172697 Gso14g0583 14 5691233 5693727 PCT
Gso14g0583 14 5691233 5693727 Gso18g0331 18 3130452 3132480 PCT
Gso14g0583 14 5691233 5693727 Gso13g1284 13 28170444 28172697 PCT