Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso14g0577 ATGTCTTCCCATTGGTGTCACCGGTGCAACAAATTTGTCAGAGCATGGCGACAAGAAATGCCCGTTTGTCCCGATTGCGACAGCGGATTCGTCGAAGAGATCGAACCTTCGAACCGGCCCGTCCACCACGTGGAAACTCGCCGCCGTAGGTTCCCGACAGCGGCGGCGATGTACATGATGGGCCACCGTTCGGGTAACTCGGATCACAACCCCCGTTACTCTAGCCGTCAGCATTGCCGGAACGTTATTGGAGACCGGTCACTGCTCAACCGGGTCATCATGCTCCAGAGCGAGGGGACAAGCCGCGACCGTGGCTCCGGTTTCGAGCTTTTCTTCGACGACGGAGCCGGTTCCGGTTTCCGACCTCTCCCTCCGAGGATGTCGGAGTTTCTCCTCGGAACAGGGATCGACCGTGTCATGGACCAGCTTTCCCACGTGGAGTCAAACTCCGACGGCGGGAGGCACGACCAGCAGAGCCACGCGCCGGCGTCGAAATCCGCCGTGGAGTCCCTACCGGCGATTGAGATAAACGCGACCCACACGGCGATTGAATCGCACTGCGCGGTTTGCAAGGAGCCTTTCGAGCTTTGCACCATGGCAAAGGAAATGCCATGCAAACACATATACCACGCGGAATGCATACTACCGTGGCTCGCGATTAAAAACTCGTGCCCCGTGTGCCGGCACGAGTTGCCATGCGAGAACGCACGTGCGAGATTGGAGCGCGTGGAGGAGGAGGAAGAGAACAACAACTTGGGGTTAACGATCTGGAGGTTACCGGGTGGCGGTTTTGCGGTGGGGAGATTCGGAAGAAGAGAGGGTGAGAGAGAGGTTAACGTTCCTCTTGTGTACACGGAAGTGGATGGTGGGCTTAACTTCAACAACGTTCTTGTGGGGGAACCGAGGAGGGTTTCGTGGTCGGTGTTGGAATCTAGCGGGAGCAGAAGAGGTGGCGCGTTTAGGAGAATGTTTAACCATTTGTTTAGTTGCCTGAGAGGTGGTGGGGTTGGGCCTAATCGTTCTTCTTCTTCAAGCACTGTGAGGAGTAATAGTTTTAGGGCTTCTACTCGTCAAAGCGTGGGTCCCTCTCCACCTTCTTCGCGTAGGACTTGGTCTATGGATGTCAACGGGGGAACCAGACCATGGTAA 1149 0.564 MSSHWCHRCNKFVRAWRQEMPVCPDCDSGFVEEIEPSNRPVHHVETRRRRFPTAAAMYMMGHRSGNSDHNPRYSSRQHCRNVIGDRSLLNRVIMLQSEGTSRDRGSGFELFFDDGAGSGFRPLPPRMSEFLLGTGIDRVMDQLSHVESNSDGGRHDQQSHAPASKSAVESLPAIEINATHTAIESHCAVCKEPFELCTMAKEMPCKHIYHAECILPWLAIKNSCPVCRHELPCENARARLERVEEEEENNNLGLTIWRLPGGGFAVGRFGRREGEREVNVPLVYTEVDGGLNFNNVLVGEPRRVSWSVLESSGSRRGGAFRRMFNHLFSCLRGGGVGPNRSSSSSTVRSNSFRASTRQSVGPSPPSSRRTWSMDVNGGTRPW* 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso14g0577 382 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 149 234 IPR013083 -
Gso14g0577 382 MobiDBLite consensus disorder prediction 146 168 - -
Gso14g0577 382 ProSiteProfiles Zinc finger RING-type profile. 187 228 IPR001841 -
Gso14g0577 382 MobiDBLite consensus disorder prediction 335 382 - -
Gso14g0577 382 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 2 330 - -
Gso14g0577 382 Pfam zinc-ribbon 3 34 IPR039525 GO:0061630
Gso14g0577 382 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RING1-LIKE PROTEIN 2 330 - -
Gso14g0577 382 Pfam Ring finger domain 186 228 IPR001841 -
Gso14g0577 382 CDD RING-H2_RNF181 187 231 - -
Gso14g0577 382 SUPERFAMILY RING/U-box 168 232 - -
Gso14g0577 382 SMART ring_2 187 227 IPR001841 -
Gso14g0577 382 MobiDBLite consensus disorder prediction 336 374 - -
Gso14g0577 382 Pfam Protein of unknown function (DUF1117) 253 354 IPR010543 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso14g0577 Gso-Chr14 5568401 5570160 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso14g0577 73 235 C3H Transcription Factor Family AT5G01980 33.742 4.39e-22 95.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso14g0577 - K11982 gmx:100789228 721.079