Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso14g0541 ATGTTGGTTACTGAGGACAAGTCTCATGTCGTTGTTGCCATAGACAATGATGGCTGTTGTCACCGGAGCTCTGCCGGCGGCGAGGGTTTCGCCGACGCCGGCGAACGGTCAGATGAGGAGCAAAGGTCCTCTCATGATTCTGGCACCGAGATTGTGGGAGTGTGTGAGAAGGAGAGAGGATCAGAGTGTTCTGTGGAGGTGGATCTGGTTCCTGAGGTTAAGGTGCATTTGGCCAATGTGGAGAGGGATTGTAGGATTTGCCATCTCAGCATGGATATGACCAACCATGAATCTGGGACTTCCATTGAATTGGGATGCTCTTGCAAGGATGATTTGGCTGCTGCTCACAAGCAGTGTGCTGAGGTTTGGTTCAAGATCAAGGGAAACAAAACTTGTGAAATCTGTGGATCGGTTGCACGCAATGTAGCTGGAGCTATTGAAATTCAAATGACAGAACAGTGGAATGAGGCAAATGATGCTTCCACGGCCCCACCATCTGGACCAGCACCACCCACAGAAACTCGAAATTTCTGGCAGGGTCACCGTTTTTTGAATTTCCTGCTAGCCTGTATGGTCTTTGCCTTTGTCATATCCTGGCTTTTTCACTTTAATGTGCCCTCTTGA 624 0.492 MLVTEDKSHVVVAIDNDGCCHRSSAGGEGFADAGERSDEEQRSSHDSGTEIVGVCEKERGSECSVEVDLVPEVKVHLANVERDCRICHLSMDMTNHESGTSIELGCSCKDDLAAAHKQCAEVWFKIKGNKTCEICGSVARNVAGAIEIQMTEQWNEANDASTAPPSGPAPPTETRNFWQGHRFLNFLLACMVFAFVISWLFHFNVPS* 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso14g0541 207 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 72 144 IPR013083 -
Gso14g0541 207 MobiDBLite consensus disorder prediction 28 50 - -
Gso14g0541 207 MobiDBLite consensus disorder prediction 32 50 - -
Gso14g0541 207 ProSiteProfiles Zinc finger RING-CH-type profile. 76 142 IPR011016 GO:0008270
Gso14g0541 207 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 36 207 - -
Gso14g0541 207 Pfam RING-variant domain 84 135 IPR011016 GO:0008270
Gso14g0541 207 SMART ringv_2 83 136 IPR011016 GO:0008270
Gso14g0541 207 PANTHER ZINC FINGER, RING-CH-TYPE 36 207 - -
Gso14g0541 207 SUPERFAMILY RING/U-box 81 138 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso14g0541 Gso-Chr14 5160517 5165281 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso14g0541 15 207 C3H Transcription Factor Family AT5G05830 58.586 3.54e-70 211
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso14g0541 - - gmx:100818979 429.869
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso14g0541 14 5160517 5165281 Gso2g2153 2 46189426 46194624 GST