Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso14g0540 ATGACCGAAGAAGACCGCTCCGCCCAGGAAACCGTCCACAATGGCGTCGCCTCGACGGAGCTAGGCGGCGAGGAGATGGACATCGCTGAGGTGACGGCCGCCGGAAGAGTGAAGGGACCGTGGTCTCCAGAGGAGGACGCGCTGCTGAGCCGATTGGTGGCGCAGTTCGGTGCAAGGAACTGGAGCATGATCGCGCGGGGAGTGCCGGGACGCTCCGGAAAGTCGTGCCGGCTCCGGTGGTGTAATCAGCTGGACCCTTGCGTGAAACGCAAGCCCTTCACTGAGGAAGAGGATAGCATCATAGTTTCAGCCCATGCAATCCATGGAAACAAATGGGCAGCAATTGCTAGGCTTCTTCCAGGAAGAACAGATAATGCAATCAAGAATCACTGGAATTCTACACTGAAGCGCAGGTGTATGGAAATGGGAAGATATGTCCCAGCACATGCTGATGGGATGGAAGATGGTACTGGCAGCTTTGATAAAACAAAAGCATCCTCTGAAGAAACCATGTCAATTGGGGATATCAATTCAAAGAATCCTGCTGAAGTCAGAAATGTCATGATGGATAATGAAAATAAACCTCCAACAAAAGATGATGCTAAAGTGGAGGAACATCCTACTCTTCATCGACCAGTAGCACGTGTTAGTGCATTTAGTGTTTATAACACTCCAGGAAGGTCAACAATGGGATCATGTTCAAAGATGTTCCCAAGGCAGAGCCCTTTGATCCAATCCCCCAAACCAGACGTAGGATCCTGCAAGTTATTTGATGATATTGATTGTGAGCCCATGGTTCCATCACAATGTGGTCATGGCTGCTGCACAGGAGACTCGAGGGAAAGCCATACGCATGGTTCACTTCTAGGTCCTGAGTTTGTTGACTATTTGGAGTCACCTTCCTCTAGTCATGCATTTATTTCTATAGCTACTGACTTGAACAATATAGCTTGGATCAAGAGTGGCCTTGAGAATTGTAGTACTGGAGTAACTGAGAATACTGCAAACTTGACAGCATCTCGAGGAGTTGCCAGTGCTTTGCAAACAAACTTCTTAGGACAAGATCTAAAGAATGGCTACGGGCAATTTGAGGAGGGACATGGCATGTTTTTGGGTGCGATGCAAGAAGTGTTGTCAACAAAGATGGCTAGGCAACATTATGCAATGCCTGCGGAAGTTTAA 1182 0.4822 MTEEDRSAQETVHNGVASTELGGEEMDIAEVTAAGRVKGPWSPEEDALLSRLVAQFGARNWSMIARGVPGRSGKSCRLRWCNQLDPCVKRKPFTEEEDSIIVSAHAIHGNKWAAIARLLPGRTDNAIKNHWNSTLKRRCMEMGRYVPAHADGMEDGTGSFDKTKASSEETMSIGDINSKNPAEVRNVMMDNENKPPTKDDAKVEEHPTLHRPVARVSAFSVYNTPGRSTMGSCSKMFPRQSPLIQSPKPDVGSCKLFDDIDCEPMVPSQCGHGCCTGDSRESHTHGSLLGPEFVDYLESPSSSHAFISIATDLNNIAWIKSGLENCSTGVTENTANLTASRGVASALQTNFLGQDLKNGYGQFEEGHGMFLGAMQEVLSTKMARQHYAMPAEV* 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso14g0540 393 MobiDBLite consensus disorder prediction 1 25 - -
Gso14g0540 393 Gene3D - 91 151 - -
Gso14g0540 393 Gene3D - 37 89 - -
Gso14g0540 393 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 85 139 IPR017930 -
Gso14g0540 393 CDD SANT 92 135 IPR001005 -
Gso14g0540 393 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 33 84 IPR017930 -
Gso14g0540 393 ProSiteProfiles Myb-like domain profile. 33 84 IPR001005 -
Gso14g0540 393 ProSiteProfiles Myb-like domain profile. 85 135 IPR001005 -
Gso14g0540 393 PANTHER MYB PROTEIN-RELATED 13 326 - -
Gso14g0540 393 CDD SANT 40 82 IPR001005 -
Gso14g0540 393 Pfam Myb-like DNA-binding domain 38 84 IPR001005 -
Gso14g0540 393 Pfam Myb-like DNA-binding domain 90 134 IPR001005 -
Gso14g0540 393 PANTHER MYB TRANSCRIPTION FACTOR-LIKE PROTEIN 13 326 - -
Gso14g0540 393 SUPERFAMILY Homeodomain-like 35 131 IPR009057 -
Gso14g0540 393 SMART sant 89 137 IPR001005 -
Gso14g0540 393 SMART sant 37 86 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso14g0540 Gso-Chr14 5152687 5157404 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso14g0540 36 325 MYB Transcription Factor Family AT3G55730 51.133 2.90e-99 299
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gso14g0540 Myb_DNA-binding 3.5e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso14g0540 K09422 - gmx:100781228 805.823