Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso14g0493 ATGGAAAGTTACTACTATTCTGGCTGGCCTCTGGCTCAATTCAACTCTGCACCAAACAGTGATCAATTATCTCCTTTTTCAGTCCCAACAACAACACAACAAACACTCCCTCTTGTTGCTACTTCAACTTCTGACCGTGCAGCAGCAGCCTCTCTTCAATTTGGTGAGTTCCCTTCGTGGCCTGCCCCCATTGCAGCAGAAGATAGAGCTGCAAGTGCTTCCAAGAGCCACAGCCAAGCAGAGAAAAGGCGCAGGGACAGGATTAATGCACAGCTTGCAACTCTCAGAAAACTCATTCCCATGTCTGATAAGATGGACAAAGCAACATTACTAGGGAGTGTGGTAGACCATGTGAAAGATCTAAAGCGAAAAGCCATGGATGTCAGCAAAGCCATTACTGTTCCAACTGAAACTGATGAAGTAACAATTGACTACCACCAAGCTCAAGATGAAAGCTACACAAAAAAAGTGAACATATTAAAGGAAAACATCATAATCAAAGCTTCTGTTTGCTGTGATGATCGACCAGAACTGTTCCCTGAGCTCATCCAAGTCCTCAAAGGGTTGAGACTTACAGCAGTTAAAGCTGACATAGCCAGTGTTGGTGGCAGAATCAAAAGCATATTGGTTCTTTGCTCAAAGGATAGTGAAGAGAATAATAGTGTTTGCCTTAGCACTCTCAAACAATCACTTAAATCTGCTGTGAACAAAATTGCTTCGTTATCCGTGGCAACAAATTGTCCCACTAGAAGTAAGAGGCAGAGGTTCTTCTTGCCTTCTCATTACGTACAATAA 795 0.4302 MESYYYSGWPLAQFNSAPNSDQLSPFSVPTTTQQTLPLVATSTSDRAAAASLQFGEFPSWPAPIAAEDRAASASKSHSQAEKRRRDRINAQLATLRKLIPMSDKMDKATLLGSVVDHVKDLKRKAMDVSKAITVPTETDEVTIDYHQAQDESYTKKVNILKENIIIKASVCCDDRPELFPELIQVLKGLRLTAVKADIASVGGRIKSILVLCSKDSEENNSVCLSTLKQSLKSAVNKIASLSVATNCPTRSKRQRFFLPSHYVQ* 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso14g0493 264 Gene3D - 66 130 IPR036638 GO:0046983
Gso14g0493 264 CDD bHLH_AtAIG1_like 67 144 - -
Gso14g0493 264 Pfam Helix-loop-helix DNA-binding domain 75 121 IPR011598 GO:0046983
Gso14g0493 264 CDD ACT_UUR-ACR-like 169 234 - -
Gso14g0493 264 MobiDBLite consensus disorder prediction 67 86 - -
Gso14g0493 264 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 73 124 IPR036638 GO:0046983
Gso14g0493 264 SMART finulus 78 127 IPR011598 GO:0046983
Gso14g0493 264 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 72 121 IPR011598 GO:0046983
Gso14g0493 264 PANTHER TRANSCRIPTION FACTOR BHLH30 21 263 IPR045847 GO:0003700|GO:0006355
Gso14g0493 264 PANTHER TRANSCRIPTION FACTOR BHLH51 21 263 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso14g0493 Gso-Chr14 4670253 4672042 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso14g0493 14 262 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G40200 42.126 8.71e-52 167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gso14g0493 HLH 1.8e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso14g0493 - - gmx:100306102 510.76
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso14g0493 14 4670253 4672042 Gso2g2197 2 46684391 46686312 GST
Gso18g0227 18 1962040 1963860 Gso14g0493 14 4670253 4672042 PCT
Gso13g1393 13 29457535 29459344 Gso14g0493 14 4670253 4672042 PCT
Gso14g0493 14 4670253 4672042 Gso18g0227 18 1962040 1963860 PCT
Gso14g0493 14 4670253 4672042 Gso13g1393 13 29457535 29459344 PCT