Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso14g0475 ATGGCACACAGAAAAAGGCGTTTAGATCAACTCAAGCATCCATTCAGTCCTCACCCCTTTGAAGCAGTTGCATTTGGCTCATGGCAAGCCGTGGAGTTCATAAAAATTGAGGGAGGAACTATGTCCATGCATTTTGTAGATAATCATCATATGGTTATGGAGAAAGGACCCTTGTCAGATATACGGATAAGGTCAAGGAATGCTACTTTATCAGATTGCTCCCGTTTTCTACGTCCTGGAATTGATGTATGTGTGCTATCTGCCCCTCAACAATCTGATGATGCAGATGCAATTAATATCGACCCTGTTTGGGCTGATGCCAAAATAAGCTCTGTACAGAGAAAACCTCATGACTCTGAGTGCTCGTGTCAGTTTTATGTCAACTTTTATGTTCATCAAGGTTCACTCGGTGCAGAGCTAAGAACTCTCAGTAGGGAGATCAAAGTGGTTGGAATCAATCAAATATCCATCCTCCAAAAACTTGAAAGTACTCCTTGTGAAAATCAGCACTACCGGTGGGCATCATCTGAGGACTGTTCCATTATATCACACACTAAATTGCTTCTGGGAAAAGTGTTATGTGATCTTTCATGGTTAGTTGTTACCACAGCTTTAAAGAAGGTTTCAATCTGCGTAAGATCTCTACAAGACAAGCTAGTGTATCAAGTTTTGGGAAGGGATACTGTTAGCACTTCATTGAACAATGAATCTCACATTGATGTTGTGAATTTCAAAACAGACAAAGGCATGTTAGTACCCATTGTTTCTCAAGTAGCTACACTTAAAACCAAGAGGGTTGATCCTGAACAGGAATCCCATGAAGATAAAGAATCACCATCTTACAATGTCGAAGGCTTAAGGCGTTCCAAACGTCGGAATGTACAACCTGAGCGTTACCTTGGTTGTGAAAAAGTTTCCCAGATTGATGTTGGTTCTTTTAGAAACTTACCACCAGTTAAGATAGACACTTGGAAAGATAATGATATTGATCATGAAATGTATATACCATTAGCCGGCCTGTTTCGTTGGCAAAAGAAGTGTCTAGAAGGGGATACTGACAATCATCAAAAGGTCAAGAAGGTGAGTACATGCCGGGAGCTTGTGGTGTACAAAAGGAAGAAGACTAAATCCCAGAAAGTGAGGTCAGGAGGTGATGATCAGAATGAACATCAAAATCATCTGGCTATTATTCCTCTTCCTGCTCAACATGATCCGGTAGAAGTTATACATTGTGATGATCTATATGACAAGGTTACTAGAAGTTATGGTAATGAATCCTCTGAAATTTCTTCCAAGTATCATCATCTAACTGGTACCACTTCAAAGAAGAACGATGTTAAATTGTTAACTTTTGAGTCTCATTATCATGCTGCAAAGTCAGATGATGGAGAAAAGAGTGATGATTTGTCATGGAGATATCATTATAGTTATGGCGCCCCTAAGTCACAGAGGAAGGGTTTAAGTGATCTGGATGATATGGTGAATCTTGGAAATAAATGGGAAGGGATTAGTTCCAGTAAAGTAGTTAAAGGGAAAAAACACCGTACAACATATTTTGGAAGTAGAGATCATGGAGAAGAAAAAAGATACAATTATAAAGACAGATCCTTAAATGCAGCTGCCTACAAGGATTTGATAAATTCATACTTGAAGAATATTAATACTAGACCAACCAATGAAGAACCAGCTATTGCTGACCAGTGGAAGCAAACGGAAACACCAAGCAGCATTGGGCAAAAGACAGAAACTGAGGTGCTCCGCAAAGAGGAGGCGGAAGAAGAATCTGAAATGGATATGCTGTGGAGAGAACTGGAAGTGTCATTGGCATCATGCTATCTAGAAGAAGACACAGAAGATTCAAATGCTGCTGTTTTCACTGAGACTCTGGAAAATCCGAATGCAGGTTGTCCTCATGATTTCAGAATGAATGAAGAAATTGGAATTTACTGCTATAGATGTGGCTTTGTGAGCACGGAGATCAAATATATTACACCTCCCTTTATTCAACATTCAGTGTGGCACCAAGAGGAGAAGCAGATCCCTGAAGAAGATTCAAAGACCAAGGCTAATGAAGACGATGACATTGATCTCTTGCCAGCTCTAGACTCTCCTGAGAAACCTGTGTCTCAAGAAAATGATAACGTTTGGGTGTTAATTCCCGAACTTAAAGCAAAGTTGCACGCCCACCAGAAGAAAGCATTTGAGTTTCTTTGGCAAAACATTGCAGGGTCCATGGACCCGGGATTGATGGAAGCAGCATCCAAAAGAAGAGGTGGCTGTGTGGTATCTCATACTCCTGGAGCGGGAAAAACTTTTCTCATCATTGCTTTTCTTGTTAGCTACTTGAAGTTATTCCCAGGGAAGAGGCCATTAGTCCTTGCTCCAAAGACAACACTCTATACTTGGTACAAGGAATTTATCAAGTGGGATATTCCTATACCAGTGTATCTGATTCATGGTCGTAGAACCTACCGTGTATTCAAGCAGAAATCCTCGATTGTTATTCCTGGAGTTCCTAAGCCCACTGATGATGTCAAGCATGTTTTGGATTGCCTTGAGAAGATACAAAAATGGCATTCGCACCCGAGTGTTCTGATCATGGGTTATACTTCATTTTTAACATTGATGCGAGAGGATTCAAAGTTTGCACATAGGAAATACATGGCTAAGGTATTGAGGGAAAGCCCTGGGGTCATGGTGCTGGATGAAGGGCACAATCCTAGAAGCACCAAATCTAGGCTGAGAAAAGTTTTGATGAAAGTGCAGACAGAACTGAGAATACTGCTTTCTGGCACATTGTTTCAGAACAATTTCTGCGAGTACTTCAACACTTTGTGCTTGGCAAGGCCAAAGTTTATTCATGAAGTACTGAAAGCATTGGACCCGAAATACAAGAGGAAAGGAAAAGTGGCAAAAAAAGCGAGTCATTTATTAGAGTCGCGAGCTAGAAAATTCTTCTTAGACCAAATTGCTAAGAAAATTGACTCAAGTAATGGTAGGGAGAGGCGGAAGGGTCTAAAGATGTTGAGAAATGTGACAAATGGTTTCATTGATGTGTATGAAGGTGGGAGTTCTGATGGTCTACCTGGTTTGCAAATTTATACATTGCTGATGAATTCAACTGATACACAGCACGAGATTTTGCATGAACTGCACAAGAAAATGGCCAAAGTCAATGGATACCCTCTGGAGCTAGAACTTTTGATAACTCTAGGTTCAATACATCCTTGGTTGGTGAAATCAGCAGTATGTGCTGAGAAATTTTTCACTCAAGCGCAATTGATGGAGCTAGAGAAATGCAAGTTTGATCTGAGAATAGGGTCCAAAGTAAAATTTGTTTTGAGTCTTATCTACAGGGTTGTCAAGAAGGAGAAGGTTCTTATATTTTGCCACAACATTGCACCTGTTAAATTATTTGTGGAATATTTTGAGAAGTACTTTGGATGGACAAAAGGTAGGGAAGTGTTGGTGCTAACTGGGGAACTAGAGCTGTTTGAAAGGGGGAGAGTGATGGACAAGTTTGAGGAGCCTGGTGGAGTAGCAAAGATACTACTTGCTTCAATCACTGCTTGTGCTGAAGGCATTAGTTTAACAGCTGCTTCAAGAGTGATCATGTTGGACTCAGAGTGGAACCCTTCAAAAACAAAGCAAGCCATTGCCCGTGCCTTTCGCCCCGGTCAGCAGAAAGTTGTTTATGTTTATCAGCTCTTGGTGACAGGTTCATTGGAGGAAGATAAGTACAAAAGAACCACTTGGAAAGAGTGGGTTTCAAGCATGATCTTCAGTGAGGCCTTTGTGGAGGACCCTTCTCAGTGGCAAGCTGAGAAGATTGAAGATGATATACTCAGGGAAATGGTTGCGGAGGACCGGTCTAAATCATTCCATATGATCATGAAGAATGAAAAAGCTTCTACCAACAAATAA 3924 0.4077 MAHRKRRLDQLKHPFSPHPFEAVAFGSWQAVEFIKIEGGTMSMHFVDNHHMVMEKGPLSDIRIRSRNATLSDCSRFLRPGIDVCVLSAPQQSDDADAINIDPVWADAKISSVQRKPHDSECSCQFYVNFYVHQGSLGAELRTLSREIKVVGINQISILQKLESTPCENQHYRWASSEDCSIISHTKLLLGKVLCDLSWLVVTTALKKVSICVRSLQDKLVYQVLGRDTVSTSLNNESHIDVVNFKTDKGMLVPIVSQVATLKTKRVDPEQESHEDKESPSYNVEGLRRSKRRNVQPERYLGCEKVSQIDVGSFRNLPPVKIDTWKDNDIDHEMYIPLAGLFRWQKKCLEGDTDNHQKVKKVSTCRELVVYKRKKTKSQKVRSGGDDQNEHQNHLAIIPLPAQHDPVEVIHCDDLYDKVTRSYGNESSEISSKYHHLTGTTSKKNDVKLLTFESHYHAAKSDDGEKSDDLSWRYHYSYGAPKSQRKGLSDLDDMVNLGNKWEGISSSKVVKGKKHRTTYFGSRDHGEEKRYNYKDRSLNAAAYKDLINSYLKNINTRPTNEEPAIADQWKQTETPSSIGQKTETEVLRKEEAEEESEMDMLWRELEVSLASCYLEEDTEDSNAAVFTETLENPNAGCPHDFRMNEEIGIYCYRCGFVSTEIKYITPPFIQHSVWHQEEKQIPEEDSKTKANEDDDIDLLPALDSPEKPVSQENDNVWVLIPELKAKLHAHQKKAFEFLWQNIAGSMDPGLMEAASKRRGGCVVSHTPGAGKTFLIIAFLVSYLKLFPGKRPLVLAPKTTLYTWYKEFIKWDIPIPVYLIHGRRTYRVFKQKSSIVIPGVPKPTDDVKHVLDCLEKIQKWHSHPSVLIMGYTSFLTLMREDSKFAHRKYMAKVLRESPGVMVLDEGHNPRSTKSRLRKVLMKVQTELRILLSGTLFQNNFCEYFNTLCLARPKFIHEVLKALDPKYKRKGKVAKKASHLLESRARKFFLDQIAKKIDSSNGRERRKGLKMLRNVTNGFIDVYEGGSSDGLPGLQIYTLLMNSTDTQHEILHELHKKMAKVNGYPLELELLITLGSIHPWLVKSAVCAEKFFTQAQLMELEKCKFDLRIGSKVKFVLSLIYRVVKKEKVLIFCHNIAPVKLFVEYFEKYFGWTKGREVLVLTGELELFERGRVMDKFEEPGGVAKILLASITACAEGISLTAASRVIMLDSEWNPSKTKQAIARAFRPGQQKVVYVYQLLVTGSLEEDKYKRTTWKEWVSSMIFSEAFVEDPSQWQAEKIEDDILREMVAEDRSKSFHMIMKNEKASTNK* 1308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso14g0475 1307 SMART ultradead3 722 956 IPR014001 -
Gso14g0475 1307 Gene3D - 701 993 IPR038718 -
Gso14g0475 1307 CDD DEXHc_ATRX-like 726 956 - -
Gso14g0475 1307 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1027 1288 IPR027417 -
Gso14g0475 1307 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2 20 1305 - -
Gso14g0475 1307 Gene3D - 1081 1300 IPR027417 -
Gso14g0475 1307 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1113 1277 IPR001650 -
Gso14g0475 1307 MobiDBLite consensus disorder prediction 264 288 - -
Gso14g0475 1307 CDD SF2_C_SNF 1101 1237 - -
Gso14g0475 1307 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 710 953 IPR027417 -
Gso14g0475 1307 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 751 951 IPR014001 -
Gso14g0475 1307 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 20 1305 IPR044567 GO:0080188
Gso14g0475 1307 Pfam SNF2-related domain 751 994 IPR000330 GO:0005524|GO:0140658
Gso14g0475 1307 MobiDBLite consensus disorder prediction 263 288 - -
Gso14g0475 1307 Pfam Helicase conserved C-terminal domain 1109 1225 IPR001650 -
Gso14g0475 1307 SMART helicmild6 1137 1226 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso14g0475 Gso-Chr14 4498935 4506313 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso14g0475 1138 1244 RAD5 or RAD16-like Gene Family AT5G05130 38.182 5.70e-11 65.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Gso14g0475 SNF2_N 1.7e-16 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso14g0475 K10875 - gmx:100811703 2604.71
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g0209 18 1789294 1798072 Gso14g0475 14 4498935 4506313 PCT
Gso14g0475 14 4498935 4506313 Gso18g0209 18 1789294 1798072 PCT