Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso14g0474 ATGGGTGCTTATGATCAAGTTTCTCTTAAGCCATTGGATTCTTCTAGAAAGAGGAAAAGTAGGAGCAGAGGGTATGGGACTAGATCCGTGGCTGAGACTATTGCAAAGTGGAAGGAATACAACGAACACCTTTATTCTGGCAAAGATGATAGTAGAACAACTCCAAAGGCACCGGCTAAAGGTTCGAAGAAAGGGTGCATGAAAGGGAAGGGAGGACCTCAAAACTCTCAGTGTAACTACAGAGGAGTTAGGCAGAGGACATGGGGGAAATGGGTTGGTGAGATTAGGGAGCCCAATAGAGGAAGCAGGCTTTGGTTGGGTACCTTCTCTTCTGCCCAGGAAGCTGCTCTTGCCTATGATGAAGCTGCTAGAGCTATGTATGGTCCTTGTGCACGCCTCAATTTTCCCGGCATCACAGATTATGCTTCTTTTAAGGAATCGTTGAAGGAATCTCCGATGGCCGCATCGTCCTCTTGTTCTTCGGCAGAAACTGCAACATCTGACACTACTACTACATCCAACCAATCGGAGGTTTGTGCAGCTGATGATGTTAAGGAGAATCCTCGACTTGTCAATGTGAATGATAAGGTTAACGATTGTCATAAGGCTTATGAAGCTGCCTCACCAACTAGCAGAATGAAGCAAGAGCCTAAGGATGAGGCTGTGGATCACATGGTCCCCGGGGCTGGGAAAATTCTAGATGTCAGACCAGAAGGAACACATGATGCCGGGCAGGTTGCAGAGGATGTAAACAAAGATCAGATGGACTTGCCATGGATTGATGGCTTTGATTTTAGTGACAATTACTTGAACAGGTTTTCCACGGATGAGTTATTTCAGGTGGATGAACTTTTGGGGCTTATAGATAATAACCCAATTGATGAGTCTGCGTTGATGCAAAGTTTGGATTTTGGACAAATGGGTTTTCCTGGAGATGGTAATCCTCAGGTGGATGATACGCTTTCAAGCTTTATTTATCAGTTGCAAAATCCAGATGCCAAGTTGTTGGGAAGTTTGCCCCATATGGAGCAGACACCTTCAGGTTTTGATTATGGATTAGATTTCTTAAAAACAGTGGAGCCAGGGGATTATAATGGTGGAGGGGAAGAACCGCGATTTCTTAATTTGGATGATGATCTGAACCCTGATTCAAAGGGCATGCAAGCAAGGAAGGATGACTAG 1182 0.4492 MGAYDQVSLKPLDSSRKRKSRSRGYGTRSVAETIAKWKEYNEHLYSGKDDSRTTPKAPAKGSKKGCMKGKGGPQNSQCNYRGVRQRTWGKWVGEIREPNRGSRLWLGTFSSAQEAALAYDEAARAMYGPCARLNFPGITDYASFKESLKESPMAASSSCSSAETATSDTTTTSNQSEVCAADDVKENPRLVNVNDKVNDCHKAYEAASPTSRMKQEPKDEAVDHMVPGAGKILDVRPEGTHDAGQVAEDVNKDQMDLPWIDGFDFSDNYLNRFSTDELFQVDELLGLIDNNPIDESALMQSLDFGQMGFPGDGNPQVDDTLSSFIYQLQNPDAKLLGSLPHMEQTPSGFDYGLDFLKTVEPGDYNGGGEEPRFLNLDDDLNPDSKGMQARKDD* 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso14g0474 393 Pfam AP2 domain 78 128 IPR001471 GO:0003700|GO:0006355
Gso14g0474 393 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 10 363 - -
Gso14g0474 393 SMART rav1_2 79 143 IPR001471 GO:0003700|GO:0006355
Gso14g0474 393 CDD AP2 78 136 IPR001471 GO:0003700|GO:0006355
Gso14g0474 393 MobiDBLite consensus disorder prediction 1 28 - -
Gso14g0474 393 MobiDBLite consensus disorder prediction 362 393 - -
Gso14g0474 393 Gene3D AP2/ERF domain 79 137 IPR036955 GO:0003700|GO:0006355
Gso14g0474 393 MobiDBLite consensus disorder prediction 372 393 - -
Gso14g0474 393 PRINTS Ethylene responsive element binding protein signature 80 91 IPR001471 GO:0003700|GO:0006355
Gso14g0474 393 PRINTS Ethylene responsive element binding protein signature 102 118 IPR001471 GO:0003700|GO:0006355
Gso14g0474 393 ProSiteProfiles AP2/ERF domain profile. 79 136 IPR001471 GO:0003700|GO:0006355
Gso14g0474 393 MobiDBLite consensus disorder prediction 154 180 - -
Gso14g0474 393 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 10 363 - -
Gso14g0474 393 MobiDBLite consensus disorder prediction 45 78 - -
Gso14g0474 393 MobiDBLite consensus disorder prediction 154 183 - -
Gso14g0474 393 SUPERFAMILY DNA-binding domain 79 136 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso14g0474 Gso-Chr14 4484960 4487231 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso14g0474 16 377 AP2-EREBP Transcription Factor Family AT2G40340 39.510 1.06e-70 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gso14g0474 AP2 3e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso14g0474 - K09286 gmx:100800134 739.569