Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso14g0424 ATGCGCCGAGGGAGAGCCACCGCCGCCGTCGTGGATCCGACGGCGGAGCAGGCGAAGGAGACGCGGTTCCGCGGCGTCAGGAAGCGGCCGTGGGGGCGATTCGCGGCGGAGATTCGAGATCCGTGGAAGAAGCAGCGCGTGTGGCTGGGGACGTTCGATTCCGCCGAGGATGCCGCGCGGGCTTACGACAAGGCTGCCCGATCCTTCCGCGGGCCCAAGGCCAAGACCAATTTCCCCTCCTTCCCCGGCCCGACGGACCACCACTCCTCGCAGCAGATTCCGCCGCTCTACCAGGCCCACGGGCTTTCCACCAAGTTCGAGCCCGCCCAGGTGAACCGGCCCACCACCAGCGGCATGAGCAGCACCGTGGAGTCCTTCAGCGGGCCTAGGGTTCCCCCCTCCTCCTCCTCCTCTCGCAAGCCCCTTGTGGTTGTTAACCCTATCATCCCTCTCGACGACGACGACGACGATTGCCACAGCGATTGCGACTCTTCTTCCTCCGTCGTCGACGACCAGGACTGCGTCCTCACCTCCTCCTTCCGGCAACCGCTTCCCTTTGATCTAAACCTCCCGCCGCCCGATGCCGCCTACGACGACGACGACGACGACGACGTCCCCGCCACCGCGCTGTGCCTCTGA 639 0.6667 MRRGRATAAVVDPTAEQAKETRFRGVRKRPWGRFAAEIRDPWKKQRVWLGTFDSAEDAARAYDKAARSFRGPKAKTNFPSFPGPTDHHSSQQIPPLYQAHGLSTKFEPAQVNRPTTSGMSSTVESFSGPRVPPSSSSSRKPLVVVNPIIPLDDDDDDCHSDCDSSSSVVDDQDCVLTSSFRQPLPFDLNLPPPDAAYDDDDDDDVPATALCL* 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso14g0424 212 SMART rav1_2 22 85 IPR001471 GO:0003700|GO:0006355
Gso14g0424 212 Gene3D AP2/ERF domain 21 80 IPR036955 GO:0003700|GO:0006355
Gso14g0424 212 MobiDBLite consensus disorder prediction 109 143 - -
Gso14g0424 212 CDD AP2 21 79 IPR001471 GO:0003700|GO:0006355
Gso14g0424 212 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 8 187 - -
Gso14g0424 212 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 3 8 187 - -
Gso14g0424 212 Pfam AP2 domain 21 71 IPR001471 GO:0003700|GO:0006355
Gso14g0424 212 MobiDBLite consensus disorder prediction 182 207 - -
Gso14g0424 212 MobiDBLite consensus disorder prediction 109 142 - -
Gso14g0424 212 PRINTS Ethylene responsive element binding protein signature 23 34 IPR001471 GO:0003700|GO:0006355
Gso14g0424 212 PRINTS Ethylene responsive element binding protein signature 45 61 IPR001471 GO:0003700|GO:0006355
Gso14g0424 212 ProSiteProfiles AP2/ERF domain profile. 22 79 IPR001471 GO:0003700|GO:0006355
Gso14g0424 212 SUPERFAMILY DNA-binding domain 22 79 IPR016177 GO:0003677
Gso14g0424 212 MobiDBLite consensus disorder prediction 71 93 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso14g0424 Gso-Chr14 4047713 4048889 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso14g0424 1 212 AP2-EREBP Transcription Factor Family AT1G50640 48.261 6.89e-44 144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gso14g0424 AP2 3.8e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso14g0424 K09286 - gmx:100795557 321.242
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso14g0424 14 4047713 4048889 Gso2g2269 2 47324479 47325655 GST