Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso14g0423 ATGCCGGAAAACAGGCAGGTTCTGAGGAATGCTGATTCTAGTGACAACATTGAAGAAGCAATTCGGCGTTTGAAAATCAATGATAATTGGGATAGAGATGCTGCAGCTCAATCTACCCAATATCCAGATCGACCCGGTGAACCTGAGTGCTTGTATTATTTGAGGACTGGAGCGTGTGGTTATGGGAGTAACTGTCGCTACCATCACCCTGCTCATATTTCAATTGGTACTCATTATGGTGAAGAACTCCCTCAGAGGGCAGGGCAACCTGATTGCGAGTATTTTCTTAAGACTGGGATGTGCAAGTATGGATCAACATGTAAATATCATCATCCAAAGGACAGGCGAGGTGCTGCTCCCGTGTCATTCAATACTTTAGGTCTTCCCATGCGTCAGGAAGAAAAATCATGTCCCTATTACATGAGAACTGGGTCTTGTAAGTTTGGTGTTGCATGCAAGTTTCATCATCCACAGTATGCTTCCCTCGGAGCATACCCATTGGCTGGTGGACCTCCTACTCCTACCTCAACAATTATTCCTACATCAGGTTTATCATATGCTGGAGGGTTTCCTGCATGGTCAGCAGTACCAAGAATGTCGTATTTATCTGGACAAGGCCTTCAATCATATGTGCCTCCTTTTCTGCCTTCTTCACAAGGTGTTATACCTGTGCAGAGCTGGAACAACTACATGGGAAATATGAACCCTGCAATGCCGAACGGTTTTCTTGGATCTAATCTTGTTTATGACTACATGAATCTGGGCGAGCCACTTTTTGGTGGGCAGGCAATCAATTCAGCTCTCCCGAATAGACCAGATCAACCAGAATGTAGATACTTTATGAGCACTGGGACCTGCAAATATGGATCTGATTGCAAGTTCCACCACCCAAAGGAAAGAATATCTCAATCATTAATAAATCCACTTGGCCTTCCTGTGAGACCTGGGCAAGCTGTATGCTCTTATTACAGAATCTATGGAATGTGCAAGTTTGGCCCAACATGCAAATTTGATCATCCAGTTTTGACTATCCCTCAGAACTATGGCTTGACCTCACCTGCTATGAATGTACTTGATACTCCTCTCAACAGGGGGTTATCAAATGTACAACCACCTGAGACATCTCCTTCTAAATTATCAAGTGACAACAAGCTTCAGCATTCTGATGCAAAAGCTGCTACAGAAGATTCATCCAAACAAGATGATACTACATCAAATTCCTTCCCGGCTTCTGCAGAGCCATTACACGACTAA 1254 0.4386 MPENRQVLRNADSSDNIEEAIRRLKINDNWDRDAAAQSTQYPDRPGEPECLYYLRTGACGYGSNCRYHHPAHISIGTHYGEELPQRAGQPDCEYFLKTGMCKYGSTCKYHHPKDRRGAAPVSFNTLGLPMRQEEKSCPYYMRTGSCKFGVACKFHHPQYASLGAYPLAGGPPTPTSTIIPTSGLSYAGGFPAWSAVPRMSYLSGQGLQSYVPPFLPSSQGVIPVQSWNNYMGNMNPAMPNGFLGSNLVYDYMNLGEPLFGGQAINSALPNRPDQPECRYFMSTGTCKYGSDCKFHHPKERISQSLINPLGLPVRPGQAVCSYYRIYGMCKFGPTCKFDHPVLTIPQNYGLTSPAMNVLDTPLNRGLSNVQPPETSPSKLSSDNKLQHSDAKAATEDSSKQDDTTSNSFPASAEPLHD* 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso14g0423 417 SUPERFAMILY CCCH zinc finger 130 158 IPR036855 GO:0046872
Gso14g0423 417 SUPERFAMILY CCCH zinc finger 49 71 IPR036855 GO:0046872
Gso14g0423 417 SUPERFAMILY CCCH zinc finger 91 115 IPR036855 GO:0046872
Gso14g0423 417 ProSiteProfiles Zinc finger C3H1-type profile. 86 114 IPR000571 GO:0046872
Gso14g0423 417 SUPERFAMILY CCCH zinc finger 312 340 IPR036855 GO:0046872
Gso14g0423 417 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 89 113 IPR000571 GO:0046872
Gso14g0423 417 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 135 158 IPR000571 GO:0046872
Gso14g0423 417 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 273 298 IPR000571 GO:0046872
Gso14g0423 417 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 46 70 IPR000571 GO:0046872
Gso14g0423 417 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 316 340 IPR000571 GO:0046872
Gso14g0423 417 SMART c3hfinal6 44 71 IPR000571 GO:0046872
Gso14g0423 417 SMART c3hfinal6 86 113 IPR000571 GO:0046872
Gso14g0423 417 SMART c3hfinal6 314 341 IPR000571 GO:0046872
Gso14g0423 417 SMART c3hfinal6 133 158 IPR000571 GO:0046872
Gso14g0423 417 SMART c3hfinal6 271 298 IPR000571 GO:0046872
Gso14g0423 417 MobiDBLite consensus disorder prediction 361 383 - -
Gso14g0423 417 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 26 9 405 - -
Gso14g0423 417 Gene3D - 81 164 - -
Gso14g0423 417 Gene3D - 16 80 - -
Gso14g0423 417 ProSiteProfiles Zinc finger C3H1-type profile. 271 299 IPR000571 GO:0046872
Gso14g0423 417 ProSiteProfiles Zinc finger C3H1-type profile. 314 342 IPR000571 GO:0046872
Gso14g0423 417 SUPERFAMILY CCCH zinc finger 275 300 IPR036855 GO:0046872
Gso14g0423 417 ProSiteProfiles Zinc finger C3H1-type profile. 44 72 IPR000571 GO:0046872
Gso14g0423 417 ProSiteProfiles Zinc finger C3H1-type profile. 131 159 IPR000571 GO:0046872
Gso14g0423 417 MobiDBLite consensus disorder prediction 361 417 - -
Gso14g0423 417 MobiDBLite consensus disorder prediction 384 398 - -
Gso14g0423 417 Gene3D - 265 342 - -
Gso14g0423 417 PANTHER PROTEIN PHOSPHATASE RELATED 9 405 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso14g0423 Gso-Chr14 4036840 4041470 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso14g0423 8 402 C3H Transcription Factor Family AT1G04990 48.184 2.71e-116 343
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Gso14g0423 zf-CCCH 4.1e-07 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso14g0423 - - gmx:100792928 867.84
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso14g0423 14 4036840 4041470 Gso2g2270 2 47329838 47334988 GST