Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso14g0400 ATGATAGGGTTTGGAGGGAACAGTTGCAGTGAGCTTTCTGAGATGGACATGATGAACATGGAAACTAATAATAGGAAGTTTCTTTCTCTGCCTCTCAGTAACAACAACAACAACTCTGGTAATGCCCAAATGCGCAGTAGTAGCGATAATAGAAGGGTACCTGTCACTAGCAATAGCAATATCGCTCAGGAACATCACTACAGCCACCACAACCCCACCGACACTTGCAGTGTGAGGGATAAAATCATGGCACACCCTCTTTTTCCTCGTCTCTTGTCCTCTTACCTTAATTGCCTCAAGGTTGGAGCACCTCCTGAAGTGGTGGCTAGCTTAGAGGAGTCATGTGCCAAATGTGAGTCCTTCAATGCATCATCAGGAAGGACAGGTGGTTCAATAGGTGAAGATCCAGCTCTGGACCAGTTCATGGAGGCCTACTGTGAGATGCTCATTAAGTATGAGCAAGAGCTCACTAAACCCTTCAAAGAAGCCATGCTTTTCTTCTCAAGAATTGAGTGTCAACTCAAAGCCCTAGCAGTTTCATCAGATTTTGGTCAAAGTGAAACATCTTCGCAGAATGAGGTTGATGTTCATGAAAACAACCTAGATTCTCAAGCTGAAGATCGTGAACTCAAAGTCCAGCTTTTGCGCAAGTATAGTGGATATCTAGGGAGCCTCAAGAAGGAATTTTTGAAGAAGAAAAAGAATGGAAAGTTGCCAAAGGAAGCTCGGCAACAGCTACTTGATTGGTGGAACAGGCATTATAAATGGCCATACCCTTCGGAATCTCAAAAGCAGGCACTTGCAGAATCCACAGGCCTAGATCTGAAACAAATCAACAACTGGTTCATCAATCAGAGAAAACGTCATTGGAAGCCTTCTGAGGATATGCAATTTGCCGTGATGGATGCAACTAACTACTACATGGAAAATGTTATGTGCAAGCCATTTCCAATGGATGGCATGCCTATGCTTCTTTAA 978 0.4366 MIGFGGNSCSELSEMDMMNMETNNRKFLSLPLSNNNNNSGNAQMRSSSDNRRVPVTSNSNIAQEHHYSHHNPTDTCSVRDKIMAHPLFPRLLSSYLNCLKVGAPPEVVASLEESCAKCESFNASSGRTGGSIGEDPALDQFMEAYCEMLIKYEQELTKPFKEAMLFFSRIECQLKALAVSSDFGQSETSSQNEVDVHENNLDSQAEDRELKVQLLRKYSGYLGSLKKEFLKKKKNGKLPKEARQQLLDWWNRHYKWPYPSESQKQALAESTGLDLKQINNWFINQRKRHWKPSEDMQFAVMDATNYYMENVMCKPFPMDGMPMLL* 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso14g0400 325 MobiDBLite consensus disorder prediction 28 54 - -
Gso14g0400 325 SMART KNOX1_2 76 120 IPR005540 GO:0003677|GO:0005634
Gso14g0400 325 ProSiteProfiles ELK domain profile. 209 229 IPR005539 GO:0003677
Gso14g0400 325 ProSiteProfiles 'Homeobox' domain profile. 229 292 IPR001356 GO:0003677
Gso14g0400 325 Pfam ELK domain 209 230 IPR005539 GO:0003677
Gso14g0400 325 CDD homeodomain 241 293 IPR001356 GO:0003677
Gso14g0400 325 SMART KNOX2_2 128 179 IPR005541 GO:0003677|GO:0005634
Gso14g0400 325 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 1 316 - -
Gso14g0400 325 SMART ELK_2 209 230 IPR005539 GO:0003677
Gso14g0400 325 PANTHER HOMEOBOX KNOTTED-LIKE PROTEIN 1 316 - -
Gso14g0400 325 SMART HOX_1 231 296 IPR001356 GO:0003677
Gso14g0400 325 Pfam Homeobox KN domain 249 288 IPR008422 GO:0003677|GO:0006355
Gso14g0400 325 SUPERFAMILY Homeodomain-like 231 303 IPR009057 -
Gso14g0400 325 Pfam KNOX1 domain 78 119 IPR005540 GO:0003677|GO:0005634
Gso14g0400 325 Pfam KNOX2 domain 131 177 IPR005541 GO:0003677|GO:0005634
Gso14g0400 325 ProSitePatterns 'Homeobox' domain signature. 267 290 IPR017970 GO:0000981|GO:0006355
Gso14g0400 325 Gene3D - 227 300 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso14g0400 Gso-Chr14 3688231 3692987 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso14g0400 78 319 Homeobox Transcription Factor Family AT1G62360 69.922 7.13e-112 328
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Gso14g0400 KNOX2 4.4e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso14g0400 - - gmx:100791704 630.943
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso14g0400 14 3688231 3692987 Gso2g2290 2 47548456 47553192 GST