Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso14g0346 ATGGCTAAGAAACGAAAGCTTCGATCCTCTGACCCCGAACCCACCAAACCCATCGAGCCACAGCAACAGGACCAAGAGCCAGTTGAACTCGACCAACAGCAACAACAACCCAACCCCAAACAAACCCTAGAAGATCCTAACACGATGGCCGTCGACGAATCAAAACAGGAAGAAGAAGAAGAAGAAGAAGACGAAGAACCCCAAAACGCCGAAAGCGAAGAAGAGGAAGAGGAAGCTGAGGAACAACAAGAGGAGCGGCCACCAGAAACCCTAGAAGAGCAACAGGATCCAGAAACCCTGGCGGCTGCAAACCACGCCGAAGTGAACGGCGGCAATGAAGGAAACAACGAAGAAGAGGAAGAGGAGGATCTCACTCTCGAAGAAGAGCCCGTGGAGAAGCTTCTGGAACCGTTCACAAAGGAGCAGCTCCACTCTCTCGTCACGCAGGCCGTGGATATGTTTCCCGAATTCGTCGATAGCGTGCGCCGGCTTGCTGACGTGGACCCTGCGCACAGGAAAATCTTCGTCCATGGCCTTGGCTGGGACGCCACTGCCGATACTCTAACCGCCGTGTTCGGGAAATACGGCGAGATCGAGGATTGCAAGGCCGTCACCGACAAGGTCTCCGGGAAATCAAAGGGTTACGCCTTTATCCTCTTCAAGCACAGGGACGATGCTCGCAAGGCGCTGAAACACCCTCAAAAGAAGATCGGAAACCGCACCACCTCGTGCCAGCTGGCCTCCGCCGGCCCCGTTCCGGCTCCACCGCCGAACGTGACCCCGGTGTCTGAGTACACCCAGAGGAAGATTTTTGTGAGCAATGTGAATGCTGAGATTGATCCTCAGAAGCTGCTTGAATTCTTCAAGCAGTTTGGGGAGGTTGAGGATGGTCCTCTTGGTTTGGATAAGAACACTGGGAAACCTAAGGGTTTTGCGCTTTTTGTGTACAAGTCTGTGGAGAGTGCCAAGAAGGCTTTGGAAGAGCCTCATAAGAACTATGAGGGGCATACTTTGTATTGTCAGAAGGCTGTTGATGGTCCTAAGGGGAGCAAGGGGTATCATCATCAGCAGCATTCTCATCCTCATCACCACCACCACCATCAGCCTCATTACCAGAGGAAGGAGAAGAACAAGTATTCCTCTGGTGGTGGTGGACCATCGCATGGAAGTGGTCATTTGATGGCGCCCTCGGGCTCTGCTGTGGGGGGTTTCAACCCTGGTTTGCCTGCACAGGGGTTGAATCCAGCACTTGGACAGGCGTTGACTGCGTTGATTAACCAGGGAGCTGGATTGGGGCTTGGGAATCTGCTTGGAGGGCTTGGGGGTGCCCCAGTTAACCAGGCGGGACCTCCTGCTCCGTATGCGAATCAGCCTGCTATGGGGTATGGGAACCAGCCAGCAATGCAACCCGGATACCAGAATCCTCAAATGGGACAGGGCAGTGGTGTGAGACCTCATCCTGGTGCTGGTGCTCCTTACATGGGTCATTAG 1491 0.5406 MAKKRKLRSSDPEPTKPIEPQQQDQEPVELDQQQQQPNPKQTLEDPNTMAVDESKQEEEEEEEDEEPQNAESEEEEEEAEEQQEERPPETLEEQQDPETLAAANHAEVNGGNEGNNEEEEEEDLTLEEEPVEKLLEPFTKEQLHSLVTQAVDMFPEFVDSVRRLADVDPAHRKIFVHGLGWDATADTLTAVFGKYGEIEDCKAVTDKVSGKSKGYAFILFKHRDDARKALKHPQKKIGNRTTSCQLASAGPVPAPPPNVTPVSEYTQRKIFVSNVNAEIDPQKLLEFFKQFGEVEDGPLGLDKNTGKPKGFALFVYKSVESAKKALEEPHKNYEGHTLYCQKAVDGPKGSKGYHHQQHSHPHHHHHHQPHYQRKEKNKYSSGGGGPSHGSGHLMAPSGSAVGGFNPGLPAQGLNPALGQALTALINQGAGLGLGNLLGGLGGAPVNQAGPPAPYANQPAMGYGNQPAMQPGYQNPQMGQGSGVRPHPGAGAPYMGH* 497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso14g0346 496 Coils Coil 65 85 - -
Gso14g0346 496 SUPERFAMILY RNA-binding domain, RBD 164 252 IPR035979 GO:0003676
Gso14g0346 496 SUPERFAMILY RNA-binding domain, RBD 252 362 IPR035979 GO:0003676
Gso14g0346 496 MobiDBLite consensus disorder prediction 353 373 - -
Gso14g0346 496 Gene3D - 261 391 IPR012677 -
Gso14g0346 496 MobiDBLite consensus disorder prediction 113 128 - -
Gso14g0346 496 SMART rrm1_1 173 245 IPR000504 GO:0003723
Gso14g0346 496 SMART rrm1_1 269 341 IPR000504 GO:0003723
Gso14g0346 496 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 268 346 IPR000504 GO:0003723
Gso14g0346 496 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 270 338 IPR000504 GO:0003723
Gso14g0346 496 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 174 241 IPR000504 GO:0003723
Gso14g0346 496 MobiDBLite consensus disorder prediction 15 49 - -
Gso14g0346 496 PANTHER NUCLEOTIDE-BINDING ALPHA-BETA PLAIT DOMAIN-CONTAINING PROTEIN-RELATED 1 483 - -
Gso14g0346 496 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 172 249 IPR000504 GO:0003723
Gso14g0346 496 CDD RRM_RBM24_RBM38_like 268 343 - -
Gso14g0346 496 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G 1 483 - -
Gso14g0346 496 MobiDBLite consensus disorder prediction 54 87 - -
Gso14g0346 496 MobiDBLite consensus disorder prediction 344 400 - -
Gso14g0346 496 CDD RRM_RBM24_RBM38_like 172 247 - -
Gso14g0346 496 MobiDBLite consensus disorder prediction 1 128 - -
Gso14g0346 496 MobiDBLite consensus disorder prediction 449 496 - -
Gso14g0346 496 Gene3D - 165 260 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso14g0346 Gso-Chr14 3123111 3127520 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso14g0346 264 347 C2H2 Transcription Factor Family AT2G19380 29.762 6.06e-09 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso14g0346 K12741 - gmx:100783742 800.816
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso14g0346 14 3123111 3127520 Gso2g2340 2 47977563 47980307 GST