Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso14g0340 ATGGGAAACTCCTGCAGAAAACCAGTGGCTCATGTATCTTCAGCAAGTTTCTTTGGAAGCACAAAGTGTCAGAGTAAGACAAAACAGAACTCAAATTCTTCTGAACGAAAAGCTCCTTTAAAAACATCAGCATCAAATGTTGGCAAACCCATTTCCAATAGCCTCAAGTCCTTCACCTTCAATGATCTAAGAGAGGCCACTAAGAACTTCAGGCAAGAAAACTTAATTGGAGAAGGAGGGTTTGGATTTGTCTACAAGGGATGGATAGATGAGAACACATGCACTCCAACAAAACCAGGGACTGGAATTGTAGTGGCCATCAAGAAACTTAAACCAGAAAGCTTTCAAGGCCACAGAGAATGGCTGGCAGAAGTCAATTATCTAGGCCAGCTTCACCACGAAAATATGGTGAAACTTATTGGTTACTGCACAGATGGTAAAAACAGGCTTCTAGTTTATGAGTTTATGCAGAAAGGAAGTTTGGAAAATCATTTATTCAGAAAAGGTGTTCAACCTATTCCATGGATTACACGGATCAACATTGCAGTTGCTGTTGCAAGAGGATTAACATTTTTACATACCCTCGATACAAATGTTATATATCGTGACTTGAAGGCTTCCAACATCCTACTTGATTCGGATTTCAATGCTAAGCTTTCGGATTTTGGCTTAGCAAGAGATGGTCCTACTGGAGATAACACTCATGTTTCAACAAGAGTTATTGGTACTCATGGTTATGCTGCACCTGAGTATGTAGCTACAGGTCATTTGACCCCAAGGAGTGATGTATACAGCTTTGGAGTTGTGTTGTTAGAATTACTAACAGGAAGGCGTGTAGTTGAAGATGATAGACCTGGATTTTCAGAAGAAACACTGGTGGATTGGGCAAGGCCATTCTTGAGTGATAGCAGAAGAATTTTGAGAATCATGGATTCAAGGTTGGGTGGTCAATACTCCAAGAAAGGAGCACGGGCTGCAGCAGCACTTGTACTACAATGTCTAAATACTGATCCCAAATATAGACCAACTATGGTAACTGTTCTAGCAGAATTGGAAGCACTACATTCCTCAAATTCATTCCCAAGGACCCCAAAATCTGGAACTGAGAATCATACAACAGAGCATTCTAGTCATTCCCACAAGTCAGCTACAAGTAGTAACAAACTATGA 1170 0.406 MGNSCRKPVAHVSSASFFGSTKCQSKTKQNSNSSERKAPLKTSASNVGKPISNSLKSFTFNDLREATKNFRQENLIGEGGFGFVYKGWIDENTCTPTKPGTGIVVAIKKLKPESFQGHREWLAEVNYLGQLHHENMVKLIGYCTDGKNRLLVYEFMQKGSLENHLFRKGVQPIPWITRINIAVAVARGLTFLHTLDTNVIYRDLKASNILLDSDFNAKLSDFGLARDGPTGDNTHVSTRVIGTHGYAAPEYVATGHLTPRSDVYSFGVVLLELLTGRRVVEDDRPGFSEETLVDWARPFLSDSRRILRIMDSRLGGQYSKKGARAAAALVLQCLNTDPKYRPTMVTVLAELEALHSSNSFPRTPKSGTENHTTEHSSHSHKSATSSNKL* 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso14g0340 389 Gene3D Phosphorylase Kinase; domain 1 45 155 - -
Gso14g0340 389 ProSitePatterns Protein kinases ATP-binding region signature. 76 109 IPR017441 GO:0005524
Gso14g0340 389 SUPERFAMILY Protein kinase-like (PK-like) 50 352 IPR011009 -
Gso14g0340 389 Gene3D Transferase(Phosphotransferase) domain 1 156 377 - -
Gso14g0340 389 SMART serkin_6 70 354 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso14g0340 389 PANTHER OS01G0588500 PROTEIN-RELATED 17 378 - -
Gso14g0340 389 ProSiteProfiles Protein kinase domain profile. 70 354 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso14g0340 389 MobiDBLite consensus disorder prediction 23 48 - -
Gso14g0340 389 ProSitePatterns Serine/Threonine protein kinases active-site signature. 199 211 IPR008271 GO:0004672|GO:0006468
Gso14g0340 389 Pfam Protein kinase domain 71 348 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso14g0340 389 CDD STKc_IRAK 76 354 - -
Gso14g0340 389 MobiDBLite consensus disorder prediction 357 389 - -
Gso14g0340 389 PANTHER TYROSINE KINASE FAMILY PROTEIN 17 378 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso14g0340 Gso-Chr14 3057723 3061929 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso14g0340 49 351 Glycoside Hydrolase AT3G07070 51.623 6.58e-103 308
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Gso14g0340 Pkinase 2.2e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso14g0340 - - gmx:102664409 764.222
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g1005 18 16053168 16056668 Gso14g0340 14 3057723 3061929 PCT
Gso13g0516 13 17580878 17585156 Gso14g0340 14 3057723 3061929 PCT
Gso14g0340 14 3057723 3061929 Gso18g1005 18 16053168 16056668 PCT
Gso14g0340 14 3057723 3061929 Gso13g0516 13 17580878 17585156 PCT