Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso14g0335 ATGGCCGTCATGAGCATCATCTTTCTGCTGATCAAAGTAGTTGTGATATCTTGGTTACCACAAGAGGGAGATAATGTTAAGGATGATCAAGAGGACCAGTTAGTAGTAGATCATTTAGCGGAAGAAGAAGATAGTTTTCTGAAGAAAGGACCATGGACAGCGGAAGAAGATGCAATATTGGCAGCATATGTGACAAGCAATGGAGTGGGAAACTGGAATATAGTGCGAAAGAATACTGGACTAGCTCGATGTGGGAAAAGCTGCCGATTAAGGTGGACAAATCATCTTAGACCAGACCTAAAAAAAGGAGCATTTACCCAAGAAGAACAACTCAAAGTTATTCAACTTCATGCTTTAATGGGAAATAAATGGGCTAGAATGGCACAGGAGCTGCCTGGTCGCACAGACAACGAAATAAAGAACTTTTGGAACACAAGACAAAAGAAAAGGAAACGTGCTGGTTTGCCACTCTACCCAGAAGACATAGAAGTGTTGAATGTTGACAACCCACAAAGTATTAATCAAAATGTTTCCACCCAGCATGCTAATGACTCACAACCAGGCACATCATCTCATAATGTACCAGAATTGGTATTCAACAATTACAAGCTTGTCAATGGAAAGCATCCATCCTGTGTTCCACCCATTTCAGTGATGCCTGAAAACAGCACCTTTGAGCAACAAGATAATTCAGATAAACAAGTTATGCATCCGCCACATTTGCAAATTATGCATCGTTCCCACGAGCAGCTTCAAGACTCGCTACCAAATGATTATATAAAGTTTCAGGGTGATTACATGTCTTGTGATGATAAATGTTCAAGTGGCATTTCCCTGCCATCATTTGACGATGACTTATTGAGAATGGGAGAGGATCCTCCGACTCAGACTCATGATCAATACTATGAACCACGTTCTCCACGCAGCAATGGCTATTTGGAATCCATATTTTGCCCACCACCAAAGATTGTGGAAGGATCAGATGATTGTTCCATGCAAGGAGAGTCAAGTTTAGGAAACGGAGAAAATTTAGACCCCATTATGAATCAAGATACTTTAGGTGACACTTGGGAGTTGAGAACCCTTCTTCAAGATGGAGGCTCTATTGGGTTTGTCCTTGTTCCTGGTTCATTTGATTATCTCCTCCTTGACCTATCATTTTAG 1164 0.4115 MAVMSIIFLLIKVVVISWLPQEGDNVKDDQEDQLVVDHLAEEEDSFLKKGPWTAEEDAILAAYVTSNGVGNWNIVRKNTGLARCGKSCRLRWTNHLRPDLKKGAFTQEEQLKVIQLHALMGNKWARMAQELPGRTDNEIKNFWNTRQKKRKRAGLPLYPEDIEVLNVDNPQSINQNVSTQHANDSQPGTSSHNVPELVFNNYKLVNGKHPSCVPPISVMPENSTFEQQDNSDKQVMHPPHLQIMHRSHEQLQDSLPNDYIKFQGDYMSCDDKCSSGISLPSFDDDLLRMGEDPPTQTHDQYYEPRSPRSNGYLESIFCPPPKIVEGSDDCSMQGESSLGNGENLDPIMNQDTLGDTWELRTLLQDGGSIGFVLVPGSFDYLLLDLSF* 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso14g0335 387 ProSiteProfiles Myb-like domain profile. 44 96 IPR001005 -
Gso14g0335 387 SUPERFAMILY Homeodomain-like 48 143 IPR009057 -
Gso14g0335 387 CDD SANT 51 96 IPR001005 -
Gso14g0335 387 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 44 96 IPR017930 -
Gso14g0335 387 PANTHER MYB DNA-BINDING DOMAIN PROTEIN 32 254 - -
Gso14g0335 387 Gene3D - 104 184 - -
Gso14g0335 387 CDD SANT 104 145 IPR001005 -
Gso14g0335 387 SMART sant 101 149 IPR001005 -
Gso14g0335 387 SMART sant 48 98 IPR001005 -
Gso14g0335 387 ProSiteProfiles Myb-like domain profile. 97 147 IPR001005 -
Gso14g0335 387 Pfam Myb-like DNA-binding domain 102 145 IPR001005 -
Gso14g0335 387 Pfam Myb-like DNA-binding domain 49 96 IPR001005 -
Gso14g0335 387 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 97 151 IPR017930 -
Gso14g0335 387 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 32 254 - -
Gso14g0335 387 Gene3D - 48 101 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso14g0335 Gso-Chr14 3017803 3023460 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso14g0335 47 162 MYB Transcription Factor Family AT5G55020 76.724 2.18e-59 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gso14g0335 Myb_DNA-binding 1e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso14g0335 K09422 - gsj:114385238 805.823
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso13g0514 13 17511580 17523444 Gso14g0335 14 3017803 3023460 PCT
Gso14g0335 14 3017803 3023460 Gso13g0514 13 17511580 17523444 PCT