Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso14g0333 ATGTCAAGTGGAGCAACACACTGGTGTTATGCATGCAGACAGCCAATTGTGCTTGATGGGAGAGATCCTGTTTGCCCTTACTGTGATGGAGGATTTGTGCAAGAACTTGACGAGTTGCGAGGAATTGCACCCAACCATAACCATACCTTTTCGTCACAGTCAGGAGACTTTCATCAAATGCCTGACATTTTCGATGCTATACATGCTTTTATGGGGCAGAGAGGTTCTGACCAGAGATTTGGGCTTATGGACGCCGTTGATAATTTCATGAGGCATAGAATGGCCGGAAGAAACTCAAACTTTGATGTTAGAGGGAGGTCTGGTTCTCTCCCAGTTCCTGAACAGAGTTGGGGCGTTTATAGTTCCGGTCCTTATTTAATATTTCACGGTCAAGTTCCTGGATTCACCTTGTCTGCTGGCAGCCCAAGAGGTGGTCCTAGGCGTGTTGATTTTGGTGACTACTTTATGGGTCCTGGACTGGAAGAACTTATTGAGCAACTCACCATGAATGATCAGCGTGGTCCAGCCCCAGCTGCACGATCTTCAATTGATGCAATGCCTACTATTAAGATAACACAGGCGCATCTTCGCTCGGATTCACACTGTCCAGTTTGTAAGGAAAAATTTGAATTGGGCACTGAAGCCAGAGAGATGCCATGCAACCATATTTACCATTCTGACTGTATTGTTCCTTGGTTGGTTCAGCATAACTCATGTCCTGTTTGCCGTGTTGAGCTGCCACCTCAAGGACAGGCTAGTTCCCGTGGTACTCGAAGTTGGGGAGGAAGGAATGCCAGCAACAGCAGCAGCAGTGGCAGCAATGATAGCTCCAGGGGCAGAGAGAACAGCCATCAGAACCATGGAAGGAGAAATCCATTTTCATTTTTGTGGCCATTCCGCTCGTCTAACTCGAACAATAATCATTATTCTGAGACTGGGGGAAGCAGCTCTTCAACCACTCCTGACCAGAATAATGGAACAAGTTATAGCGGTTGGCCCTTTGATCGCTAA 1011 0.4698 MSSGATHWCYACRQPIVLDGRDPVCPYCDGGFVQELDELRGIAPNHNHTFSSQSGDFHQMPDIFDAIHAFMGQRGSDQRFGLMDAVDNFMRHRMAGRNSNFDVRGRSGSLPVPEQSWGVYSSGPYLIFHGQVPGFTLSAGSPRGGPRRVDFGDYFMGPGLEELIEQLTMNDQRGPAPAARSSIDAMPTIKITQAHLRSDSHCPVCKEKFELGTEAREMPCNHIYHSDCIVPWLVQHNSCPVCRVELPPQGQASSRGTRSWGGRNASNSSSSGSNDSSRGRENSHQNHGRRNPFSFLWPFRSSNSNNNHYSETGGSSSSTTPDQNNGTSYSGWPFDR* 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso14g0333 336 MobiDBLite consensus disorder prediction 250 279 - -
Gso14g0333 336 SMART ring_2 202 242 IPR001841 -
Gso14g0333 336 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 165 249 IPR013083 -
Gso14g0333 336 ProSiteProfiles Zinc finger RING-type profile. 202 243 IPR001841 -
Gso14g0333 336 PANTHER OS03G0351800 PROTEIN 1 319 - -
Gso14g0333 336 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 1 319 - -
Gso14g0333 336 MobiDBLite consensus disorder prediction 296 336 - -
Gso14g0333 336 Pfam zinc-ribbon 6 36 IPR039525 GO:0061630
Gso14g0333 336 SUPERFAMILY RING/U-box 182 249 - -
Gso14g0333 336 Pfam Ring finger domain 201 243 IPR001841 -
Gso14g0333 336 CDD RING-H2_RNF126_like 202 243 - -
Gso14g0333 336 MobiDBLite consensus disorder prediction 250 336 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso14g0333 Gso-Chr14 3006996 3009569 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso14g0333 146 258 C3H Transcription Factor Family AT5G01980 41.739 5.98e-26 106
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso14g0333 K11982 - gmx:100813674 672.159
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso13g0511 13 17412703 17415427 Gso14g0333 14 3006996 3009569 PCT
Gso14g0333 14 3006996 3009569 Gso13g0511 13 17412703 17415427 PCT