Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso14g0316 ATGGGGCTTAGCGAGTCTCTGAACCTACATGATGAAAACTCGAAGGCGGCAGCGGGTGTGAGTGCGGCGATGTCTTTGATCTTAGGTGGGATTTTTGTGTTTATAGTGTGTTATTATGTCTGCATTCGTCTTCGCTCCCAAACCCACAGAGACGTGCCTGCCGCCGCCGCCGTCGCCGCCGTCAGTGACCAAGAAACGGTCGAGAAGTGTCCCGTATTCGTTTACTCGACGGTGAAGAAGGAGAATGTGGCGGCGGAGGAGTGCGCCGTGTGCTTAGGCGAGTTTGAAGACTGTGACGTGGTAAAGATGCTACCAAAATGTGAACATATTTTCCACCAGCATTGTATTGATACGTGGTTACCCTCACACATGAACTGTCCCATTTGTCGCCAGAAGGTTACGTTTGATAATAATGTGTCAAGGGAAGAACAAGAAGAAGAAGTACTAGGTACAGAGTCCGAGGTGGCAGGGACAACAGCGGAACCTGAAACTGTTGTGGGACCCGAGGAGGACGTTGGACAACAGCACTCTGAGTCTGAGGTTCTTGCTTGA 552 0.5072 MGLSESLNLHDENSKAAAGVSAAMSLILGGIFVFIVCYYVCIRLRSQTHRDVPAAAAVAAVSDQETVEKCPVFVYSTVKKENVAAEECAVCLGEFEDCDVVKMLPKCEHIFHQHCIDTWLPSHMNCPICRQKVTFDNNVSREEQEEEVLGTESEVAGTTAEPETVVGPEEDVGQQHSESEVLA* 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso14g0316 183 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 22 160 - -
Gso14g0316 183 SMART ring_2 88 129 IPR001841 -
Gso14g0316 183 ProSiteProfiles Zinc finger RING-type profile. 88 130 IPR001841 -
Gso14g0316 183 SUPERFAMILY RING/U-box 87 136 - -
Gso14g0316 183 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 48 135 IPR013083 -
Gso14g0316 183 MobiDBLite consensus disorder prediction 142 183 - -
Gso14g0316 183 CDD RING-H2_EL5_like 87 130 - -
Gso14g0316 183 Pfam Ring finger domain 87 130 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso14g0316 Gso-Chr14 2868729 2869280 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso14g0316 57 133 Rapid Response to Elicitors AT3G05200 48.101 6.67e-23 92.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso14g0316 K10664 - gmx:102659826 369.392