Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso14g0286 ATGTTAACCGCAATCCTCAGAAGAACCTGTTCCACTCTCTCAAGGCGCGGTTTCCCCGCTGCCTTAATCTCCGCCTCCACCGCCGGAAACCACTTCCGGCCACCCTCCGCGGCCTTTATTTCCAGAACCTTCCACTCCAACACTGGCCCCTTGAATTTCCGCTCCTCTTCATGTCACCGCGCAGAATACGCCGTCGACGATTTCCCTTACGAAGAAGGCTCCAAAGGGAACGCCGCCGACGAAGGCCTCGAGATCGCGAAGCTCGGAATTTCTGAGGATATTGTCTCCGCTTTGGCCAAGAAAGGCATCACCAAGCTCTTCCCCATTCAGAGGGCTGTGTTGGAACCTGCTATGCAAGGTCGTGATATGATTGGTCGAGCTAGAACTGGAACTGGGAAGACTCTTGCTTTTGGGATACCCATCATGGATAAGATCATTCAGTTTAATGCTAAGCATGGGCGGGGGAGGGATCCTTTGGCTTTGGTTTTGGCTCCGACCAGAGAGCTTGCTCGACAGGTTGAAACGGAGTTCTGTGAGTCGGCACCTAATTTGGATACAATTTGTGTTTATGGGGGTACACCCATCTCTCGGCAGATGAGGGAACTTGATTATGGGGTTGATATTGCTGTGGGAACACCTGGTCGGATTATTGACCTTCTCAACAGAGGTGCTCTAAATTTGAAGGATGTTCAGTTTGTTGTTCTTGATGAAGCTGATCAGATGCTTCAGGTGGGCTTTCAGGAAGACGTGGAGAAGATCTTGGAGAGGTTGCCCCCAAAACGTCAGACTCTTATGTTCTCTGCAACAATGCCATCTTGGATAAAGCAGATTTCGCGCAATTACCTGAATAATCCCCTGACCATTGATCTTGTTGGAGATTCTGATCAGAAGTTGGCAGATGGAATTTCACTGTACTCCATTGCAACTGATTTGTATGTTAAAGCGGGAATTCTTGCTCCTCTAATAACGGAACATGCAAAAGGAGGAAAGTGCATTGTTTTCACTCAAACAAAACGTGATGCTGATCGATTATCATATACCATGGCAAGAAGTGTTAAATGTGAGGCTTTGCATGGAGACATATCACAAGCTCAGAGGGAGAAAACTCTTGCTGGCTTCAGAAATGGCCATTTCAATGTTTTAGTGGCAACTGATGTTGCCTCACGTGGGCTTGATATACCAAATGTTGATCTTGTAATACATTATGATCTTCCCAACAATTCAGAGATATTTGTTCATCGTTCTGGACGAACAGGTCGTGCTGGTAAGAAAGGAACTGCTATTCTTGTGTATACAGAAGATCAATCGAGGGCTGTTAAGCTTATTGAGCGTGATGTGGGCAGTAGATTTACAGAGCTACCACGTATTGCTGTTGATAGTGCATCAGTGGACATGGTTGGTGGCATGGGTGGTGGGCGATTTGGTTCTTTCGGAGGTACCAGGGATCGTCGATATGGTGATACGGGTTTTGGATCTGGCCGTTCTGGGGGCTACAGTAACCCTGGTTCTGGCCGCTCTAGCTTTGGAAATTCTGGTGAAAGGTTTGGTGGACAGAATTATAATCGTTTTGGTTCTGGTAATTCATCTGGTGAAATGAATAGATATGGTGGACCAAGCTCTGGTCGTTTTGGATCATCTGGTGGCTATGGTTCAGGTCAATCAGGAAGTAGATCAGGTGGATCATCCAGTGGGTCTAGGTTTAGTCGCTCGGATGATTTTGGGGGATTTGGTGGTTCAGATCGCTCAGGTGGTTTTGGAGATTTTGGCTCAGGTGAGCCTAGTGGCTTTGGTGGTTCTCGTGGTAGTAATCAGAACAATAGAAGACCTTTTTAA 1833 0.4703 MLTAILRRTCSTLSRRGFPAALISASTAGNHFRPPSAAFISRTFHSNTGPLNFRSSSCHRAEYAVDDFPYEEGSKGNAADEGLEIAKLGISEDIVSALAKKGITKLFPIQRAVLEPAMQGRDMIGRARTGTGKTLAFGIPIMDKIIQFNAKHGRGRDPLALVLAPTRELARQVETEFCESAPNLDTICVYGGTPISRQMRELDYGVDIAVGTPGRIIDLLNRGALNLKDVQFVVLDEADQMLQVGFQEDVEKILERLPPKRQTLMFSATMPSWIKQISRNYLNNPLTIDLVGDSDQKLADGISLYSIATDLYVKAGILAPLITEHAKGGKCIVFTQTKRDADRLSYTMARSVKCEALHGDISQAQREKTLAGFRNGHFNVLVATDVASRGLDIPNVDLVIHYDLPNNSEIFVHRSGRTGRAGKKGTAILVYTEDQSRAVKLIERDVGSRFTELPRIAVDSASVDMVGGMGGGRFGSFGGTRDRRYGDTGFGSGRSGGYSNPGSGRSSFGNSGERFGGQNYNRFGSGNSSGEMNRYGGPSSGRFGSSGGYGSGQSGSRSGGSSSGSRFSRSDDFGGFGGSDRSGGFGDFGSGEPSGFGGSRGSNQNNRRPF* 611
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso14g0286 610 Gene3D - 307 462 IPR027417 -
Gso14g0286 610 MobiDBLite consensus disorder prediction 472 610 - -
Gso14g0286 610 SMART ultradead3 102 305 IPR014001 -
Gso14g0286 610 MobiDBLite consensus disorder prediction 596 610 - -
Gso14g0286 610 CDD SF2_C_DEAD 314 431 - -
Gso14g0286 610 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 83 111 IPR014014 GO:0003724
Gso14g0286 610 MobiDBLite consensus disorder prediction 544 569 - -
Gso14g0286 610 Gene3D - 84 292 IPR027417 -
Gso14g0286 610 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 35 511 - -
Gso14g0286 610 SMART helicmild6 342 422 IPR001650 -
Gso14g0286 610 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 157 443 IPR027417 -
Gso14g0286 610 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 317 461 IPR001650 -
Gso14g0286 610 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 114 288 IPR014001 -
Gso14g0286 610 Pfam DEAD/DEAH box helicase 107 276 IPR011545 GO:0003676|GO:0005524
Gso14g0286 610 Pfam Helicase conserved C-terminal domain 317 422 IPR001650 -
Gso14g0286 610 MobiDBLite consensus disorder prediction 493 535 - -
Gso14g0286 610 CDD DEADc 94 289 - -
Gso14g0286 610 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 53-LIKE 35 511 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso14g0286 Gso-Chr14 2498418 2503299 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso14g0286 88 454 Eukaryotic Initiation Factors Gene Family AT3G19760 33.423 5.80e-67 222
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso14g0286 - - gmx:100786041 1057.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso14g0286 14 2498418 2503299 Gso2g2392 2 48508263 48513284 GST
Gso8g2519 8 42422911 42430603 Gso14g0286 14 2498418 2503299 PCT
Gso14g0286 14 2498418 2503299 Gso8g2519 8 42422911 42430603 PCT