Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso14g0262 ATGAAGGTTCCCAAGTTTTCAAGTGTTGCACACAGACTAATAATGGATGTGGCCAAGTTACATAACTCTGATGATGATGATGACAAGAAAGAAGAAGAAGTTGTGCTTCCTGGGTTTAGATTCCATCCAACAGATGAAGAACTTGTGGGGTTTTATCTGAGACGAAAGGTGGAGAAGAAGCCTCTGAGAATTGAACTCATCAAACAGATTGACATCTACAAATATGATCCATGGGATCTTCCAATGAGTTCAGTTGGGGAGAAGGAATGGTACTTCTTTTGCATAAGAGGGAGAAAATACAGGAACAGCATAAGGCCTAATAGAGTGACAGGTTCTGGATTTTGGAAAGCCACAGGGATTGACAAGCCTATATACTGTGTTAGAGAACCCCAAGAATGCATTGGTCTAAAGAAATCATTGGTCTACTATCGTGGAAGTGCTGGTAAAGGTACCAAAACTGATTGGATGATGCACGAGTTTCGCCTCCCACCCAATGGAAAAACTAGCAATAATCCACAAGCTAATGATGCCAATGATGTTCAAGAAGCTGAAGTGTGGACGCTATGCCGAATATTCAAACGAGTCCCAACTTACAAGAAGTACACACCAAATTTGAAAGACTCGGCAGCACCAATCACTGAGCCAAATCACCCCACAAACTCTTCAAGTTCCAAAACATGCAGCTTAGAATCTGACAACTGCAAGCCATACTTGACTTTCACAAACTCATCATCACCACAACTCATTCTACAAAATGAAAGGAAACCAATTATTAATGGACATGTTGACGTTGAACGTAACCACTTATTTCTAGGTCAATTAGGCAATGTAGCTCAGGCTCCAAGTTTTTGGAATCATCATCAGAATAATAATGTGGAATTTGCTAATGAGAATTGGGATGATCTCACATCTGTGGTTCAGTTTGCTATTGATCCATCCAGGGTTTCTGATCATAGTAAAGAATTCAATAGATTTTAA 978 0.3998 MKVPKFSSVAHRLIMDVAKLHNSDDDDDKKEEEVVLPGFRFHPTDEELVGFYLRRKVEKKPLRIELIKQIDIYKYDPWDLPMSSVGEKEWYFFCIRGRKYRNSIRPNRVTGSGFWKATGIDKPIYCVREPQECIGLKKSLVYYRGSAGKGTKTDWMMHEFRLPPNGKTSNNPQANDANDVQEAEVWTLCRIFKRVPTYKKYTPNLKDSAAPITEPNHPTNSSSSKTCSLESDNCKPYLTFTNSSSPQLILQNERKPIINGHVDVERNHLFLGQLGNVAQAPSFWNHHQNNNVEFANENWDDLTSVVQFAIDPSRVSDHSKEFNRF* 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso14g0262 325 SUPERFAMILY NAC domain 33 193 IPR036093 GO:0003677|GO:0006355
Gso14g0262 325 Pfam No apical meristem (NAM) protein 37 162 IPR003441 GO:0003677|GO:0006355
Gso14g0262 325 ProSiteProfiles NAC domain profile. 35 194 IPR003441 GO:0003677|GO:0006355
Gso14g0262 325 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 17 324 - -
Gso14g0262 325 Gene3D NAC domain 44 197 IPR036093 GO:0003677|GO:0006355
Gso14g0262 325 MobiDBLite consensus disorder prediction 206 227 - -
Gso14g0262 325 MobiDBLite consensus disorder prediction 213 227 - -
Gso14g0262 325 PANTHER - 17 324 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso14g0262 Gso-Chr14 2297343 2301106 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso14g0262 20 232 NAC Transcription Factor Family AT1G26870 55.556 9.64e-76 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Gso14g0262 NAM 1.7e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso14g0262 - - gmx:100795553 674.47
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso14g0262 14 2297343 2301106 Gso2g2413 2 48728614 48731960 GST
Gso18g0967 18 14796632 14799496 Gso14g0262 14 2297343 2301106 PCT
Gso8g2550 8 42825455 42831742 Gso14g0262 14 2297343 2301106 PCT
Gso14g0262 14 2297343 2301106 Gso18g0967 18 14796632 14799496 PCT
Gso14g0262 14 2297343 2301106 Gso8g2550 8 42825455 42831742 PCT