Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso14g0232 ATGGAATTTCCCAACGAAGCAATACCAGAAGGGTGTTCACAGAAGAAAACGGGAAGGGGGAAAATAGAAATCAAGCGGATCGAGAACACAACGAATAGGCAAGTTACCTTCTGCAAACGCCGTAACGGGTTGCTCAAGAAGGCTTATGAATTGTCTGTTCTGTGTGATGCTGAGGTTGCTCTTGTTGTCTTCTCAAGCCGTGGACGCCTCTATGAGTATGCCAACAACAGTGTTAGAGGAACGATCGATAGGTACAAGAAAGCATGTGCTGCCTCCACAAATCCAGAATCTGTCTCTGAAGCTAATACACAGTTTTATCAGCAGGAAGCGTCCAAATTAAAACGACAAATCAGAGACATTCAGAATCTAAACAGGCACATCCTTGGTGAAGCTCTTAGCTCTCTGAGTCTGAAGGAATTAAAGAACCTGGAGAGTAGACTGGAGAAAGGTTTAAGCAGAGTTAGATCCAGAAAGCATGAAACTTTGTTTGCCGATATCGAGTTCATGCAAAAGCGGGAAATAGAGCTGCAAAACCATAATAATTTTCTGAGAGCTAAGATAGCTGAACACGAGAAAGCACAACAACGGCAACAGGATATGATACCGGGAAATGTGTGCGAGTCAACCATACCTCCACAATCATATGACCGCAATTTCTTCCCTGTTAATCTCATAGATTCCAATAATCAATATTCAAATCAAGACCAGACTGCTCTTCAACTTGTCCTTTCAAGTGGTGTGGGATCCCTTACATCGTCCTATGTTTCGTGA 771 0.4293 MEFPNEAIPEGCSQKKTGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVVFSSRGRLYEYANNSVRGTIDRYKKACAASTNPESVSEANTQFYQQEASKLKRQIRDIQNLNRHILGEALSSLSLKELKNLESRLEKGLSRVRSRKHETLFADIEFMQKREIELQNHNNFLRAKIAEHEKAQQRQQDMIPGNVCESTIPPQSYDRNFFPVNLIDSNNQYSNQDQTALQLVLSSGVGSLTSSYVS* 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso14g0232 256 PRINTS MADS domain signature 19 39 IPR002100 GO:0003677|GO:0046983
Gso14g0232 256 PRINTS MADS domain signature 39 54 IPR002100 GO:0003677|GO:0046983
Gso14g0232 256 PRINTS MADS domain signature 54 75 IPR002100 GO:0003677|GO:0046983
Gso14g0232 256 ProSiteProfiles K-box domain profile. 103 193 IPR002487 GO:0003700|GO:0005634|GO:0006355
Gso14g0232 256 SMART madsneu2 17 76 IPR002100 GO:0003677|GO:0046983
Gso14g0232 256 Coils Coil 103 126 - -
Gso14g0232 256 Gene3D - 29 97 IPR036879 GO:0003677|GO:0046983
Gso14g0232 256 CDD MADS_MEF2_like 18 92 IPR033896 GO:0000977|GO:0045944
Gso14g0232 256 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 26 73 IPR002100 GO:0003677|GO:0046983
Gso14g0232 256 ProSitePatterns MADS-box domain signature. 19 73 IPR002100 GO:0003677|GO:0046983
Gso14g0232 256 ProSiteProfiles MADS-box domain profile. 17 77 IPR002100 GO:0003677|GO:0046983
Gso14g0232 256 SUPERFAMILY SRF-like 18 93 IPR036879 GO:0003677|GO:0046983
Gso14g0232 256 PANTHER MADS BOX PROTEIN 13 237 - -
Gso14g0232 256 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL1-RELATED 13 237 - -
Gso14g0232 256 Pfam K-box region 101 187 IPR002487 GO:0003700|GO:0005634|GO:0006355
Gso14g0232 256 Coils Coil 137 157 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso14g0232 Gso-Chr14 2030358 2038270 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso14g0232 13 242 MADS-box Gene Family AT2G42830 71.730 2.24e-118 337
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Gso14g0232 K-box 6.8e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso14g0232 K09264 - gmx:100792224 466.463
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g0865 18 11786868 11796067 Gso14g0232 14 2030358 2038270 PCT
Gso8g2573 8 43242951 43252287 Gso14g0232 14 2030358 2038270 PCT
Gso14g0232 14 2030358 2038270 Gso18g0865 18 11786868 11796067 PCT
Gso14g0232 14 2030358 2038270 Gso8g2573 8 43242951 43252287 PCT