Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso14g0204 ATGAGAAGGCCGAAATCGAAGGAGTTTCGCAAGCAACAGCGAGTTTCAGAGGAGGAAGAGATAAACCTCTTGAATTCATGGATCCAGTTTCAGCCACCGGACTCCGGTTCGAACCCAATGTCGCTGCCGCGTCTCCCCAAAAACTCCCCCGTTGGTCGCCTCGAAGATAACACCTACTCTCGCTACGCCGGCGCGTCACGGTTTGATCAATTTCCACTCTCGAAGAAAACCAAGGACGCCCTAAGAGAGTCCAAGTTCGTGGCCATGACCGACATCCAGAGAGCGTCTCTTCCCCACGCTCTCTGTGGCCGCGACATCCTCGGCGCCGCCAAAACTGGCTCCGGTAAAACCCTCGCTTTCATTATCCCTGTGTTGGAAAAGTTGTATAGAGAGAGATGGGGACCTGAAGATGGTGTTGGCAGCATCATCATATCGCCTACAAGAGAATTGGCTGGCCAGTTATTTGATGTGTTGAAAGTTGTTGGCAAACACCATAATTTTAGTGCTGGCCTTCTCATTGGTGGTCGAAAGGACGTTGACATGGAGAAAGAACGTGTAAATGAGCTCAACATATTGATTTGCACACCCGGTAGACTGCTGCAACACATGGATGAAACTCCCAATTTTGATTGTTCACAGATGCAGGTTTTGGTACTAGATGAGGCTGATCGGATTCTAGACAGTGGGTTCAAGAAGGAACTAAATGCAATCATTTCCCAACTACCAAAGCGTAGACAAACCTTGCTTTTCTCTGCAACTCAAACAAAGTCAATTCAAGATCTTGCAAGACTAAGTTTGAAGGATCCAGAGTATCTGAGTGTGCATGAAGAATCTGTGACTTCCACTCCTACTCTGTTGAAGCAAATTGTGATGATTGTTCCCCTGGAACAAAAGTTAGATATGTTGTGGAGTTTCATAAAGACACATCTACAGTCGAAAACACTTGTCTTTCTTTCAAGCTGTAAGCAGGTAAAATTTGTCTTTGAAGCATTTAAGAAACTGCACCCTGGCATACCATTGAAGTGCCTTCATGGGAGGATGAAACAGGAAAGAAGAATGGCAATATATTCTGAGTTTTGTGAGAAGCGCTCTGTTCTCTTCTCAACTGATGTGGCCGCAAGAGGCCTTGATTTTAATAAGGCAGTTGACTGGGTTGTTCAGGTGGATTGTCCTGAAAATGTAGCTTCTTACATACATAGAGTTGGTCGTACTGCTAGATATAAATCTGATGGAAAGTCAGTTTTATTTCTGTTGCCTTCAGAAATTCAAATGCTTGAAAAGTTAAAAGCAGCAAAGGTTCCAGTGCATTTTAATAAGCCAAGGCAAGAACTACTGCAACCAGTTTCTAGTTTGTTGGCATCTTTACTGGCCAAATACCCAGACATGCAGCATCGGGCTCAGAGGGCATTCATCACATATTTGAGATCCATCCATATCCAAAAGGATAAAGACATATTTGATGTTATGAAACTACCTATTAACGAGTATTCAGCATCATTAGGTTTACCAATGACCCCCAAAATCCGTTTTCTAAACCCGAAAATTAATTCTAAAGATGTGTCAAAATCAATTTTAGTTGAACCAGAGGATTCAGACAAGGAAACTATCTTTGAGGTTTCGAGGAAGCTAGACACAGCTGCTTTCAAGGATGAGGAAACTGAAAATGATATTCTTCAGTTAGCGGATACTGCAAATGAAGGCGAAGTTAAGTCATCTGAAATTGAAGAAATCATACCAGCAACTCGTGTATTGAAGAAAAAGAAACTCAAGATTAATGTACACAGGCCACTTGGGACTAGGGTTGTATTTGATGATGAGGGCCACACACTTCCTCCACTAGCCAGGATAGCGGACACACAGAGTGGCAAAGAAATGTTGCTCGATCCAGAAAAAAAAGCTGAATACTATAGAAGGATGCGAGATGATTTGAAGAAGGCTGACAACGAAGACAAGCTTATAGAGCGTCAGCGGCTTAGAGAAAAAAGAATCAAGCAGAAGATGAAATGGAAGGCTGGGAATGCGGAAGAGGACGACCAAGATGATATATCTGGGTCAGAAGTAGATGAGACTGTTGATAGATGGCATAAAAAGAGTAAAGTATACTTTGATAGTGACAGTGACGAGGGTGAAAGAAATGATGTTACAGGGAATGCAGGTATAACTACCGGTGCGGTTACGTTGGAGGAGCAAGAAGCTCTGGCTTTGAAATTGTTAAATTCCATGCACTCATAG 2232 0.4301 MRRPKSKEFRKQQRVSEEEEINLLNSWIQFQPPDSGSNPMSLPRLPKNSPVGRLEDNTYSRYAGASRFDQFPLSKKTKDALRESKFVAMTDIQRASLPHALCGRDILGAAKTGSGKTLAFIIPVLEKLYRERWGPEDGVGSIIISPTRELAGQLFDVLKVVGKHHNFSAGLLIGGRKDVDMEKERVNELNILICTPGRLLQHMDETPNFDCSQMQVLVLDEADRILDSGFKKELNAIISQLPKRRQTLLFSATQTKSIQDLARLSLKDPEYLSVHEESVTSTPTLLKQIVMIVPLEQKLDMLWSFIKTHLQSKTLVFLSSCKQVKFVFEAFKKLHPGIPLKCLHGRMKQERRMAIYSEFCEKRSVLFSTDVAARGLDFNKAVDWVVQVDCPENVASYIHRVGRTARYKSDGKSVLFLLPSEIQMLEKLKAAKVPVHFNKPRQELLQPVSSLLASLLAKYPDMQHRAQRAFITYLRSIHIQKDKDIFDVMKLPINEYSASLGLPMTPKIRFLNPKINSKDVSKSILVEPEDSDKETIFEVSRKLDTAAFKDEETENDILQLADTANEGEVKSSEIEEIIPATRVLKKKKLKINVHRPLGTRVVFDDEGHTLPPLARIADTQSGKEMLLDPEKKAEYYRRMRDDLKKADNEDKLIERQRLREKRIKQKMKWKAGNAEEDDQDDISGSEVDETVDRWHKKSKVYFDSDSDEGERNDVTGNAGITTGAVTLEEQEALALKLLNSMHS* 744
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso14g0204 743 Coils Coil 636 656 - -
Gso14g0204 743 Pfam Helicase conserved C-terminal domain 298 407 IPR001650 -
Gso14g0204 743 Gene3D - 52 278 IPR027417 -
Gso14g0204 743 PANTHER ATP-DEPENDENT RNA HELICASE DDX10-RELATED 57 533 - -
Gso14g0204 743 SMART helicmild6 325 408 IPR001650 -
Gso14g0204 743 CDD DEADc_DDX10 77 275 - -
Gso14g0204 743 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 218 226 IPR000629 -
Gso14g0204 743 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 138 427 IPR027417 -
Gso14g0204 743 Pfam DEAD/DEAH box helicase 90 260 IPR011545 GO:0003676|GO:0005524
Gso14g0204 743 PANTHER RNA HELICASE 57 533 - -
Gso14g0204 743 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 97 272 IPR014001 -
Gso14g0204 743 SMART ultradead3 85 289 IPR014001 -
Gso14g0204 743 SMART DUF4217_3 447 510 IPR025313 -
Gso14g0204 743 CDD SF2_C_DEAD 286 417 - -
Gso14g0204 743 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 66 94 IPR014014 GO:0003724
Gso14g0204 743 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 294 452 IPR001650 -
Gso14g0204 743 MobiDBLite consensus disorder prediction 31 53 - -
Gso14g0204 743 Gene3D - 284 577 IPR027417 -
Gso14g0204 743 Pfam Domain of unknown function (DUF4217) 451 508 IPR025313 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso14g0204 Gso-Chr14 1793377 1798175 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso14g0204 93 429 Eukaryotic Initiation Factors Gene Family AT3G19760 30.409 1.28e-37 143
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso14g0204 K14776 - gmx:100820055 1459.51