Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso14g0197 ATGGGTTGTTGTCTGAGTAAAAAAGGGTCAGAGCCAGAAGAACACATTGGTTACAGACATGTTGCTGGTGCTGGAGGTGCTGGTGTGTACAACAATCACAAGAGCCATGAACCCTTTGCCACCCAAACCAAACCCCCTCCTCACCAACCTTACCAATTACCTGAGAAACATGCTCCTCCTCAGGCACCTTGGAGGCCTCCACCAAGCCCAAAACATGTCCACAACCATGACACAATCACTGGGAAGCCATTTGAGGATGTTAAGCAGCACTACACACTTGGGAAGGAATTGGGGAGAGGCCAATTTGGGGTGACTTATCTCTGCACTGAGAATTCAACTGGCCTGCAGTATGCCTGCAAGTCCATTTCAAGGAGGAAGCTTGTGAGCAGAGCTGACAAGGAGGACATGAAGAGGGAGATTCAAATCATGCAGCATTTGAGTGGACAGTCCAACATTGTGGAGTTCAAAGGCGCTTTTGAGGATAAACAATCAGTTCATGTGGTTATGGAGCTGTGTGCTGGTGGTGAACTTTTTGACAGGATTATTGCCAAGGGCCACTACAGTGAAAGGGCTGCTGCTTCGATATGTAGACAGATTGTTAAGGTTGTTAACACCTGCCATTTTATGGGTGTCATTCATAGGGATCTCAAGCCAGAGAATTTCTTGCTATCTAGTAAGGATGACAAGGGACTTCTCAAGGCCACAGATTTTGGCTTGTCAGTTTTCATTGAAGAAGGAAAGGTGTATCGAAATATAGTTGGCAGTGCTTACTATGTTGCTCCAGAAGTTCTACGTCGTAGCTATGGGAAGGAAGCAGATATATGGAGTGCAGGAGTTATATTGTATATCTTACTTAGCGGTGTACCACCATTTTGGGCAGAGACGGAAAAGGGAATATTTGATGCCATATTGCAAGGTCATATTGATTTTGAAAGTAGTCCATGGCCAAGCATATCAAACAGTGCTAAAGACCTTGTTCGCAAAATGCTTATAAAGGATCCAAAGAAACGCATTACTGCTTCTCAGGTTCTAGAGCACCCATGGCTTAAAGAAGGTGGAAATGCTTCTGACAAGCCAATAGACAGTGCAGTGCTTTCCAGAATGAAGCAATTCAGAGCAATGAATAAACTAAAAAAACTAGCCCTCAAGGTCATTGCTGAAAATCTTTCTGAAGAAGAGATCCAAGGCTTGAAGGCAATGTTCACAAATATTGACACTGACAATAGTGGTACAATCACCTATGAGGAACTGAGGGCAGGATTGCAAAGACTTGGCTCAAAGCTTACTGAAACTGAAGTGCGACAGCTTATGGATGCCGCTGATGTAGATGGAAATGGCACAATTGACTACATAGAATTCATCACTGCTACAATGCATAGACACAGGTTAGAAAGAGATGAGCATCTTTACAAGGCCTTCCAATATTTTGACAAAGATGGCAGCGGGTATATCACAAGAGATGAACTGGAAATAGCCATGAAGGAGTATGGTATGGGTGACGAGGCCACAATCAGGGAAATTATATCTGAAGTTGACACAGATAATGATGGTAGAATCAACTATGAAGAATTTTGTACAATGATGAGGAGTGGAACCCAACAACAAGGCAAGCTATTCTGA 1620 0.4352 MGCCLSKKGSEPEEHIGYRHVAGAGGAGVYNNHKSHEPFATQTKPPPHQPYQLPEKHAPPQAPWRPPPSPKHVHNHDTITGKPFEDVKQHYTLGKELGRGQFGVTYLCTENSTGLQYACKSISRRKLVSRADKEDMKREIQIMQHLSGQSNIVEFKGAFEDKQSVHVVMELCAGGELFDRIIAKGHYSERAAASICRQIVKVVNTCHFMGVIHRDLKPENFLLSSKDDKGLLKATDFGLSVFIEEGKVYRNIVGSAYYVAPEVLRRSYGKEADIWSAGVILYILLSGVPPFWAETEKGIFDAILQGHIDFESSPWPSISNSAKDLVRKMLIKDPKKRITASQVLEHPWLKEGGNASDKPIDSAVLSRMKQFRAMNKLKKLALKVIAENLSEEEIQGLKAMFTNIDTDNSGTITYEELRAGLQRLGSKLTETEVRQLMDAADVDGNGTIDYIEFITATMHRHRLERDEHLYKAFQYFDKDGSGYITRDELEIAMKEYGMGDEATIREIISEVDTDNDGRINYEEFCTMMRSGTQQQGKLF* 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso14g0197 539 CDD EFh 471 529 IPR002048 GO:0005509
Gso14g0197 539 ProSitePatterns EF-hand calcium-binding domain. 405 417 IPR018247 -
Gso14g0197 539 PANTHER CALCIUM-DEPENDENT PROTEIN KINASE 21-LIKE 41 534 - -
Gso14g0197 539 SUPERFAMILY EF-hand 388 528 IPR011992 -
Gso14g0197 539 MobiDBLite consensus disorder prediction 1 75 - -
Gso14g0197 539 Gene3D Transferase(Phosphotransferase) domain 1 177 356 - -
Gso14g0197 539 SMART serkin_6 91 349 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso14g0197 539 MobiDBLite consensus disorder prediction 43 69 - -
Gso14g0197 539 ProSitePatterns EF-hand calcium-binding domain. 441 453 IPR018247 -
Gso14g0197 539 Gene3D - 357 534 - -
Gso14g0197 539 ProSiteProfiles EF-hand calcium-binding domain profile. 464 499 IPR002048 GO:0005509
Gso14g0197 539 ProSitePatterns Serine/Threonine protein kinases active-site signature. 211 223 IPR008271 GO:0004672|GO:0006468
Gso14g0197 539 ProSiteProfiles EF-hand calcium-binding domain profile. 500 534 IPR002048 GO:0005509
Gso14g0197 539 CDD STKc_CAMK 90 348 - -
Gso14g0197 539 Pfam EF-hand domain pair 467 529 IPR002048 GO:0005509
Gso14g0197 539 Pfam EF-hand domain pair 397 457 IPR002048 GO:0005509
Gso14g0197 539 ProSitePatterns Protein kinases ATP-binding region signature. 97 120 IPR017441 GO:0005524
Gso14g0197 539 ProSiteProfiles EF-hand calcium-binding domain profile. 428 463 IPR002048 GO:0005509
Gso14g0197 539 SUPERFAMILY Protein kinase-like (PK-like) 67 370 IPR011009 -
Gso14g0197 539 Pfam Protein kinase domain 91 349 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso14g0197 539 ProSitePatterns EF-hand calcium-binding domain. 477 489 IPR018247 -
Gso14g0197 539 Gene3D Phosphorylase Kinase; domain 1 93 176 - -
Gso14g0197 539 ProSitePatterns EF-hand calcium-binding domain. 512 524 IPR018247 -
Gso14g0197 539 ProSiteProfiles EF-hand calcium-binding domain profile. 392 427 IPR002048 GO:0005509
Gso14g0197 539 ProSiteProfiles Protein kinase domain profile. 91 349 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso14g0197 539 SMART efh_1 432 460 IPR002048 GO:0005509
Gso14g0197 539 SMART efh_1 396 424 IPR002048 GO:0005509
Gso14g0197 539 SMART efh_1 503 531 IPR002048 GO:0005509
Gso14g0197 539 SMART efh_1 468 496 IPR002048 GO:0005509
Gso14g0197 539 CDD EFh_PI-PLC 397 530 - -
Gso14g0197 539 PANTHER SERINE/THREONINE-PROTEIN KINASE 41 534 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso14g0197 Gso-Chr14 1722152 1726696 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso14g0197 31 539 EF-hand Containing Proteins AT3G20410 76.482 0.0 826
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Gso14g0197 Pkinase 5e-75 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso14g0197 K13412 - gmx:100794852 1072.38