Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso14g0173 ATGAATTCTTTAGCATTGTGTTCCCTTTGCCTGTTTCTCATTGCTCAGTCTCCTTGGTTAACAAATGCTACAGTGTTTGGTGATGGTTCCGACCTAATTGGCCAGATTTGCAATGAAAACCCAGAGAAGAAGATTGAATGCACGAATATTCTAAGAGCAGATCCTACAGTCCTGGGTGCAAAAAATCTTCTTCAACTTTCGGAGGCAATCTTGAACTTGGCCGTGAATAAGACAGAAAAAGCTGAAGATTTTCTAAAGGGATTGGCGAACACAACAGATGTTCCGGCCATTGCAAATTGTGCACTTTATTATGAAAATGCGGTTGAACGCTTTATGAGTTCTTTGCAAGTGTTGAAACACCAAGATCTTGAAGTGGCTAACTATTTGGCCGCCATTGCTGGTGATGAACCATCGTCATGTGAGACAGAATTGAGTGCTGCACATATTGTTAACCATGCAATTTCTGCTGTTAACCACCAAACAAATGTTCCGGCCATTGCAAATTGTGCACTTTATTATGAAAATGCGGTTGAACGCTTTATGAATTCTTTGCAAAAGTTGAAATGCCAAGATCTTAAAGTGGCTAACTATTTGGCCGCCATTGCTGGTGATGAACCATCGTCATGTGAGACAGAATTGAGTGCTGCACATATTGTTAACCATGCAATTTCTGCTGTTAACCACCAAACAAGTTTGCTTAGCTATATTGCATTCGTAGCCACAGGGAAACTTTCCACACTTCCACACGAACAAGAAGCTTCAGGAGGAAGTGGCGATAATCCCGTCGAAGAGGCTAAGGAACAAGATCGCGGGGTTCTCGACGGCATCTCCCTCAAGCTCCAGGAGGAGGAGCGCAAGCGCCGCATGGACTTCGTCCCCGGCCGATTGACGTCTCCGCCATCAACACCAACCACATCGAGGTCGACAAGGAAACCCACGACATGCTCCACTCCCTCGATGATAAATAACACAATGGGTGAAGGTAATACTAGTACTAGAGATATGAGCACCATAAATAACACAATGGGGGAAGGTAGTACTAGTACTAGAGATATGAGCACCGATAAAATAAATGTTGATTTAAATGAATATCCAATTGAAGATATTTCTTTAGAGAATGGTTATTCAGGAACAGTTAGTGAACATTTTGATCATGATATTGTGGCAAATGATGTATTAGAAGTTGAGGAAATTGAAACTTATGAGAAAGAAAATATTGTGTCTTCTAGTCAGAATATTGAGATAAATGAATTTGCAGAAGAAGTTGATAGAGATGAAACTTATAATGAGACAAATATTGTTCCTTTTGTTGGTCAAATTTTTCTTAGCGAGGAAGAAGCATTTGCATTTTATAAGAGGTATGCATATCAGCATGGGTTCTCTGTTCGAAAAGGTAGATTCATCAAACGAAATGGAATTATGAGGAGGCGTGATTTTTTTTGCCATCGTGAGGGTAGAAGCTCGTTGAAAATCATAGAACCATTAAAAGAACAGAGAAACAGAGAATCAACAAGGTGTGAATGTAAAGCTTATTTAAGAATTTCATTGCAGAAGTCTCATGATATATTTCCAAGTGAGTGGCGAGTTACAAAGTTTGTTGTTGAACATAACCATGTTTTGCTAACCCAATCAGAAGTGCGTTTTTTACCGGCTAACCGAACTATCTCTGAAGATGATATTGAACGCATTTTCTTGTTAAAAGAAGGGGGGCTTTTAGTTAGACAATTGATGCGTGTCATAGAATTAGAGAAAAATGTGAAGCATGGTTATCTTCCATTTATTGAAAGGGACATTCGTAATCTTTTTGTGAAAACCAAGAAAAAAGTTGAAAGAAATGATGCCAAAGATCTTCTCAAGTACTGTGAGGATGCAAAAAAGAGTTGCTCTAAATTTCAGTATGCATATACACTTGATGAAGAGAGAAGGTTAGAGCATATTTTTTGGTCTCCTGCTTCTTGCTCTGATTGGTACCAAAAATATGGTGATGTTGTTGTGTTTGATACTACATACAAGGTCAATTCTTATGAAATGCCATTTGGGATTTTTGTGGGTATGAATAGTCATGGGAAGACTGTACTTTTTGGTTGTGCACTCTTACGAAATGAAACAATATCTGCATTTCGTTGGTTAATGAAGACTTTTATATCTTTGATGAAGAAGCCACCAAAGACTATACTAACGGATCAAGATCCATGGATGAAAGAAGCAATTTCAAAAGACTTGCCATCAACAAAACATAGTTTTTGCATATGGCACATCACTTTTAAGTTTAGTAGTTGGTTTAATGCTATACTTCGGGACAAATATTCAAAATGGTGTTCTGATTTTTACGAGTTGTATAAATTGGAGACATGTGAAGAATTTGAGCATCAATGGCCAAAAGTTGTTGCTAAGTATAACTTGCAGTCAAATAAACATGTGAAAGGATTGTATGAAATCAGGAATTACTGGGCACTCGCTTATCTTCGTGACCATTTCTTTGGTGGGATGACAACTACCGGAAGATCAGAGAGTATTAATGCATTTATTAAAAGATTTATAAATTCTCACACAAGTTTAAGTGACTTTACAAAGCAGGTTGATGTAGCGATTGATGATATTAAGCAAAAAGAAGACCATGACATAATGTTAGAAAAGTGCAAAAGAATTAACTTGAAGCTTATGTCACCCTTGCAAGAGCAAGCTCATGGTGTTCTTACAAGATTTGCTTTTCAGAAGTTTCAAGAGGAGTTTGAAAGGTCCACCCAATATTCAATTCATCATGAAAATGGTAATGAATTTGTGTTGCGGTATTATAAAGATGCTAATAGTAGAAAACACATGGTCTTTTGGGATGGTAAAATAGCTACATGTAGTTGCAAGTATTTTGAGTTTTGGGGTATATTATGTCGTCACATTCTCAGTATTTTTCTTCATAAAGATTGTCATGAAATCCCTTCTAACTACTTGCCGTCACGATGGCGGCTTCAAACATCACATGACGATGATGAAGTAGATCCCCAACAAGTCAATGTTGTCTTTGAGGAACAAGTCGATGTTGTTCACTGTCCTCCACCTTCCAAAACAAAAGGTCGTCCCAAACGAAGACGTCTTAAAGGTGGAAAAGAGCTATCACATAACATGAATACTTGTGGATTGTGCAAAGATGTAGGACATAATATTGTTACATGTCCTCTAAAAGAAAATACTCAATTTTCTGGTCACACAAACAAGAAGAAAAAAATTTGTAAAGATGCAAATTTAAATCCAATTCTTCTTCCAAAAGTTTAG 3270 0.3752 MNSLALCSLCLFLIAQSPWLTNATVFGDGSDLIGQICNENPEKKIECTNILRADPTVLGAKNLLQLSEAILNLAVNKTEKAEDFLKGLANTTDVPAIANCALYYENAVERFMSSLQVLKHQDLEVANYLAAIAGDEPSSCETELSAAHIVNHAISAVNHQTNVPAIANCALYYENAVERFMNSLQKLKCQDLKVANYLAAIAGDEPSSCETELSAAHIVNHAISAVNHQTSLLSYIAFVATGKLSTLPHEQEASGGSGDNPVEEAKEQDRGVLDGISLKLQEEERKRRMDFVPGRLTSPPSTPTTSRSTRKPTTCSTPSMINNTMGEGNTSTRDMSTINNTMGEGSTSTRDMSTDKINVDLNEYPIEDISLENGYSGTVSEHFDHDIVANDVLEVEEIETYEKENIVSSSQNIEINEFAEEVDRDETYNETNIVPFVGQIFLSEEEAFAFYKRYAYQHGFSVRKGRFIKRNGIMRRRDFFCHREGRSSLKIIEPLKEQRNRESTRCECKAYLRISLQKSHDIFPSEWRVTKFVVEHNHVLLTQSEVRFLPANRTISEDDIERIFLLKEGGLLVRQLMRVIELEKNVKHGYLPFIERDIRNLFVKTKKKVERNDAKDLLKYCEDAKKSCSKFQYAYTLDEERRLEHIFWSPASCSDWYQKYGDVVVFDTTYKVNSYEMPFGIFVGMNSHGKTVLFGCALLRNETISAFRWLMKTFISLMKKPPKTILTDQDPWMKEAISKDLPSTKHSFCIWHITFKFSSWFNAILRDKYSKWCSDFYELYKLETCEEFEHQWPKVVAKYNLQSNKHVKGLYEIRNYWALAYLRDHFFGGMTTTGRSESINAFIKRFINSHTSLSDFTKQVDVAIDDIKQKEDHDIMLEKCKRINLKLMSPLQEQAHGVLTRFAFQKFQEEFERSTQYSIHHENGNEFVLRYYKDANSRKHMVFWDGKIATCSCKYFEFWGILCRHILSIFLHKDCHEIPSNYLPSRWRLQTSHDDDEVDPQQVNVVFEEQVDVVHCPPPSKTKGRPKRRRLKGGKELSHNMNTCGLCKDVGHNIVTCPLKENTQFSGHTNKKKKICKDANLNPILLPKV* 1090
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso14g0173 1089 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 407 989 IPR031052 GO:0006355
Gso14g0173 1089 Pfam Plant invertase/pectin methylesterase inhibitor 32 147 IPR006501 GO:0004857
Gso14g0173 1089 Pfam MULE transposase domain 663 754 IPR018289 -
Gso14g0173 1089 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 146 244 IPR035513 -
Gso14g0173 1089 Gene3D Invertase/pectin methylesterase inhibitor family protein 28 163 IPR035513 -
Gso14g0173 1089 MobiDBLite consensus disorder prediction 248 334 - -
Gso14g0173 1089 SMART 26again6 949 976 IPR006564 GO:0008270
Gso14g0173 1089 ProSiteProfiles Zinc finger SWIM-type profile. 931 974 IPR007527 GO:0008270
Gso14g0173 1089 PANTHER FAR1 DNA BINDING DOMAIN, ZINC FINGER, SWIM-TYPE, MULE TRANSPOSASE DOMAIN, FHY3/FAR1 FAMILY-RELATED 407 989 - -
Gso14g0173 1089 MobiDBLite consensus disorder prediction 262 292 - -
Gso14g0173 1089 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 30 145 IPR035513 -
Gso14g0173 1089 SMART PMEI_2 28 167 IPR006501 GO:0004857
Gso14g0173 1089 TIGRFAM PME_inhib: pectinesterase inhibitor domain 3 153 IPR006501 GO:0004857
Gso14g0173 1089 MobiDBLite consensus disorder prediction 297 334 - -
Gso14g0173 1089 CDD PMEI-Pla_a_1_like 37 161 IPR034088 -
Gso14g0173 1089 Pfam SWIM zinc finger 942 973 IPR007527 GO:0008270
Gso14g0173 1089 Pfam FAR1 DNA-binding domain 450 541 IPR004330 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso14g0173 Gso-Chr14 1522437 1528694 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Gso14g0173 PMEI 2.2e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso14g0173 - - gsj:114385207 2174.05