Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso14g0154 ATGGAGGAGGCCGTCTCCGATCCCCATCCGGAGATGGAGCAGCAGCAGCAGCCTCCGCCGCTTCAGAACGGGGACTCCGACGAGCGCTGCGCCAAGAAACCTAAATTCGACCAAGGCGCTGAATTCAAGAGAGTGGCGGAGATTGTGCTGGTTCTCTCCACCATGGCCACGGTGCGCGCGGGGAGAAAGCCCTCCGACGCCGAGGTCGAGCTCATGAGGGAGGCTCGCGCCAAGCTCGCCAGCCTCTGCGAGGGTTTGGCTCCGAAGGATATTGTCACCAGGGAAGCTATTGGCACCGTCATTGAGGATCTCGGATTGAACTTCAAGCTCAAGGACCAGAGATTAGGGTTTCGAACTCCCAAGATGTCCATTGCCGAGAGGTATTCCCATGCTAAGTGGAAGATGGAAGAAGCAAAGAAAATTTCTGCACCTTCTACACCTTCTACAACTCACACCTCTCAGCCCTTGCAAACAAACATTGTTGGACCAGTTGACAATCGTGTGCCATCACATGTTCGAATTTTTCCTTCTGATAAATCAAGCCACCCATCAATCCCTTCTATGGGTGCCATAGTGTCTATTCCTGCCCATGTTTCTGTGGGATCTTCTGCAGCATTGCAGTATCAAGTGATCAGCAATGAAGTAAGACCACCAGTGGTTTCTGGTGTGATGCCTGGCAGTCACTTGGGGAGAAATGCATCTTCTTTAGCATTGCCTAAAGTTGAACACCCACAGTTCAAAGTTGATGGAGGATCAAATGGGTCTCCTTACATGCTGCAAGTCCAAGCAAATTCATCAGCAAACCAACCTTTGGTGAATGCTCCAACATGGTCTATACAGAGTCAAGCTGCTTCATTAGCTAGAAGTGCATCAGAAAACAAGGTGCCTGTTCAGAACTCTGTCAAGGTTGAAGGAACACCTGACATAACTGTATCAAGGGCAGGACCACAAATAACAACAGACCCGAGCTTTAAACCATTTATCACTCAAACAGCCCCTGGAACTTTACCTAGTGTGCACCAGCCATTGCAGGCCACAAACATTGTTCAGCCTCCTTTGATTCCTAGTCACACTGACATTGCTAAGATTGTCCAGAAAGTGTTACAACCAAAGCTTCCTGTCCATCCCACGTGGACTCCTCCATCAAGGGACTATATGAATAAGGCTTTCACTTGTCAGATGTGTGAGCTCAGTGTCAATGAGGTTGATACTGTACTTCTCTGTGATGCTTGTGAAAAGGGATTTCACTTGAAGTGCCTGCAGCCATCAGTCTTGAGAGGAATTCATAATAGAGTTGATTGGCACTGTATGAGGTGCTTGAGTTTAAGTGGTGGAAAGCCTTTGCCTCCAAAATATGGTCGTGTGATGAGATCCTCGAACACACCACCAAAATTGCCTTCTAATACAGGTGGCATTCTACCTTGTTCTGAGAAGAAAGTAGAGAACATAGATCCAAAGGTCATCCCACAAACGTTAGCAACAAATGGGAGCTCTGTTCAAACTGTTTGCGGTGGCAATCACAATGTTGAGCTGTCATCTGAATCAAGGATACCAGATACCAAAGATATGCAAGGGACTAACATTTCATCCACCATTGAAGCTATTGATAAGAAGCCTGATCCAAACAACTCTATGAAATCTCTTAGTGCAGCTTCTAGTCCTTCCCCTTGCTTGCTAGGTAAAAATTCTGTTCAACAAATAAATTCTAAGGTTTTGACTGGTAAAGAGACTTTGGAATCTGAGTCTCTTCCTAAATTATCTGAGCCAGCTAAGTGTGAAGATTTGCAATCATCACAAGATTTTCAAGTTGAACATACAATGTCACAAGACAATCCTGAAGTATCATCAGATAAACATGTCGACCATAATATTATGAATAATAAACAGAAGGAATTTCATGGAGGAAAAAGTTTAACTTATGATATTAAGCGTGATGACCAAGATGCTGCACTTGCAAATTTTGTTGGAACTTCTGGAACTAATACTGACGGTACACAGCACTCTGCATTATCTTCAGATAGTTCACATGCAGTAGAATGGATTGGTGATGTAGTACAACTAGTAGATGAGAAAAAGTATTACCAATCTTGTTGTATTGATGGAGTAACATATAGGCTGCAGGGTCATGCTCTTTTCCCCACCAGCCATGGGAAACTAACTCCTTCTAAACTCCAGTCTATGTGGGAAGATTGCAAAACTGGGTTAAAGTGGGTTAAGGTGACAAACTGCTACTTTCCTGATGATTTGCCAGGGAATATTGGTCATCCGTGTATATCTGAAGTCAACGAGGTTTATGAATCTAATGGTGATAGAACTGAAATGGCTAACTCTATTCGAGGGCCATGTGAAGTCCTCCCATCTGATAAATTTAAACAAGAAAATGACATGCGATGTCAGTTAGGAATTGAGGAAACTTCTAAAGTGCAGCCCATTTTCCTTTGCAGGTGGTTTTATGACGAATTCAAGAAGTTATTTCAACCTGTAATCAGTTGA 2493 0.4412 MEEAVSDPHPEMEQQQQPPPLQNGDSDERCAKKPKFDQGAEFKRVAEIVLVLSTMATVRAGRKPSDAEVELMREARAKLASLCEGLAPKDIVTREAIGTVIEDLGLNFKLKDQRLGFRTPKMSIAERYSHAKWKMEEAKKISAPSTPSTTHTSQPLQTNIVGPVDNRVPSHVRIFPSDKSSHPSIPSMGAIVSIPAHVSVGSSAALQYQVISNEVRPPVVSGVMPGSHLGRNASSLALPKVEHPQFKVDGGSNGSPYMLQVQANSSANQPLVNAPTWSIQSQAASLARSASENKVPVQNSVKVEGTPDITVSRAGPQITTDPSFKPFITQTAPGTLPSVHQPLQATNIVQPPLIPSHTDIAKIVQKVLQPKLPVHPTWTPPSRDYMNKAFTCQMCELSVNEVDTVLLCDACEKGFHLKCLQPSVLRGIHNRVDWHCMRCLSLSGGKPLPPKYGRVMRSSNTPPKLPSNTGGILPCSEKKVENIDPKVIPQTLATNGSSVQTVCGGNHNVELSSESRIPDTKDMQGTNISSTIEAIDKKPDPNNSMKSLSAASSPSPCLLGKNSVQQINSKVLTGKETLESESLPKLSEPAKCEDLQSSQDFQVEHTMSQDNPEVSSDKHVDHNIMNNKQKEFHGGKSLTYDIKRDDQDAALANFVGTSGTNTDGTQHSALSSDSSHAVEWIGDVVQLVDEKKYYQSCCIDGVTYRLQGHALFPTSHGKLTPSKLQSMWEDCKTGLKWVKVTNCYFPDDLPGNIGHPCISEVNEVYESNGDRTEMANSIRGPCEVLPSDKFKQENDMRCQLGIEETSKVQPIFLCRWFYDEFKKLFQPVIS* 831
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso14g0154 830 SMART PHD_3 391 440 IPR001965 -
Gso14g0154 830 ProSiteProfiles BAH domain profile. 702 829 IPR001025 GO:0003682
Gso14g0154 830 ProSitePatterns Zinc finger PHD-type signature. 392 439 IPR019786 -
Gso14g0154 830 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 381 453 IPR013083 -
Gso14g0154 830 Pfam PHD-finger 392 440 IPR019787 -
Gso14g0154 830 SUPERFAMILY FYVE/PHD zinc finger 382 447 IPR011011 -
Gso14g0154 830 Gene3D - 681 829 IPR043151 -
Gso14g0154 830 CDD BAH 701 824 - -
Gso14g0154 830 ProSiteProfiles Zinc finger PHD-type profile. 389 442 IPR019787 -
Gso14g0154 830 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 16 829 - -
Gso14g0154 830 MobiDBLite consensus disorder prediction 142 163 - -
Gso14g0154 830 MobiDBLite consensus disorder prediction 1 36 - -
Gso14g0154 830 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 16 829 - -
Gso14g0154 830 MobiDBLite consensus disorder prediction 532 561 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso14g0154 Gso-Chr14 1332296 1340660 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Gso14g0154 PHD 1.9e-07 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso14g0154 - - gmx:100783208 1635.54
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso14g0154 14 1332296 1340660 Gso2g2509 2 49500363 49508125 GST