Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso14g0141 ATGGAGTCGGATCTTGGCAAGCTCTTCATTGGGGGAATTTCCTGGGACACCGATGACGAACGTCTCAAAGAATATTTTGGGAAATATGGAGAGGTGATAGAGGCTGTGATCATGAGAGATCGGACAACAGGCCGTGCTCGTGGTTTCGGTTTTGTTGTCTTTGCTGATCCTTCTGCTGCAGAGAGAGTCATTATGGATAAGCACATAATTGATGGCCGCACAGTTGAAGCTAAGAAAGCTGTTCCTAGGGATGATCAGCAAACTATAAACAGACAGTCTGGTAGCATCCATGGATCTCCGAGTCCTGGACGCACCAAAAAGATTTTTGTTGGAGGTTTACCATCAACAATCACAGAGAGTGACTTTAAGAAGTACTTTGATCAGTTTGGTACAATTGCTGATGTTGTTGTAATGTATGATCACAATACCCAGAGGCCAAGAGGTTTTGGCTTCATCACTTATGATTCAGAAGAAGCTGTGGACAGAGTTCTTTATAAGACATTTCATGAACTCAATGGGAAGATGGTTGAGGTCAAGAGGGCAGTTCCTAAAGAGCTTTCCCCTGGACCTACCCGAAGCCCATTGATAGGATATAACTATGGTTTGAATAGGACCAGTGGCTTCCTAAATAGTTATGCTCAGGGTTTCAATATGAATCCAATTGGAGGTTATGGAGTCAGGATGGATGGAAGGTTTAGTCCTCTTACTAGTGCCAGAAGTGGGTTTAGCCCATTTGGCTCCAGTGGTTATGGAATGGGAGTGAATTTGGATTTAGAATTGAACCCAAGCTATGGAGGGACTTCCAGTTATGGTGGCAGTCTGGGATACGCTCGGATGAGTCCTTTCAACAATGGCAACTCTAACAGATATACCACTCCTATTGGCAATAGCGGGGGCAATGGGAGAAGCGATTCTCTTATGAACTCAGCTTCCCGGAGTGTTTGGGGAAATGGGGGCCAGAACAATGCTGCCAATAGTCCAGTCAGCCCTGGCGCTTACTTGGGATCTGGAAGTGGGGCTTTTGGTGTTTCAATTGGAAATGGTGGCACCAATTGGGGTCCATCAGTTCCAACCCAGGGTGGAGGGGCTGCCACTGGGTATAGTACTTGGGGTAACTCTTATGATGGTGGAGATAACAACATCAGTTTAGGAGGTGGAGGGTATGGAAGGAACAGCAGCCCCAGTGTGCCTCAATCCTCAACATTTACTGCACCAACTGGTGATTATGAAGGATCCTATGGGAACTTGTACCGCAATGGTTCAGTTTACAGTGACTCAACTTGGCGGTCTGCTGCTTCTGAGATAGATGCTTCTGGTTCGTTTGGTTACGGTGGACTTGGTGGTATAGCTTCAGATGATCCAGTAAAGAGTTCTGATGGTTTTATTGGAAACTACAATGTAATAAGTAGACAAACTAATAGAGGAATTGCTGCTTAG 1437 0.4551 MESDLGKLFIGGISWDTDDERLKEYFGKYGEVIEAVIMRDRTTGRARGFGFVVFADPSAAERVIMDKHIIDGRTVEAKKAVPRDDQQTINRQSGSIHGSPSPGRTKKIFVGGLPSTITESDFKKYFDQFGTIADVVVMYDHNTQRPRGFGFITYDSEEAVDRVLYKTFHELNGKMVEVKRAVPKELSPGPTRSPLIGYNYGLNRTSGFLNSYAQGFNMNPIGGYGVRMDGRFSPLTSARSGFSPFGSSGYGMGVNLDLELNPSYGGTSSYGGSLGYARMSPFNNGNSNRYTTPIGNSGGNGRSDSLMNSASRSVWGNGGQNNAANSPVSPGAYLGSGSGAFGVSIGNGGTNWGPSVPTQGGGAATGYSTWGNSYDGGDNNISLGGGGYGRNSSPSVPQSSTFTAPTGDYEGSYGNLYRNGSVYSDSTWRSAASEIDASGSFGYGGLGGIASDDPVKSSDGFIGNYNVISRQTNRGIAA* 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso14g0141 478 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 1 478 - -
Gso14g0141 478 Gene3D - 105 185 IPR012677 -
Gso14g0141 478 MobiDBLite consensus disorder prediction 287 323 - -
Gso14g0141 478 CDD RRM2_DAZAP1 104 183 IPR034131 GO:0003723
Gso14g0141 478 SMART rrm1_1 7 78 IPR000504 GO:0003723
Gso14g0141 478 SMART rrm1_1 107 179 IPR000504 GO:0003723
Gso14g0141 478 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 6 82 IPR000504 GO:0003723
Gso14g0141 478 SUPERFAMILY RNA-binding domain, RBD 4 103 IPR035979 GO:0003676
Gso14g0141 478 Gene3D - 6 88 IPR012677 -
Gso14g0141 478 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 1 478 - -
Gso14g0141 478 SUPERFAMILY RNA-binding domain, RBD 105 193 IPR035979 GO:0003676
Gso14g0141 478 MobiDBLite consensus disorder prediction 80 105 - -
Gso14g0141 478 CDD RRM1_hnRNPA_hnRNPD_like 8 78 - -
Gso14g0141 478 MobiDBLite consensus disorder prediction 86 100 - -
Gso14g0141 478 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 108 166 IPR000504 GO:0003723
Gso14g0141 478 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 8 75 IPR000504 GO:0003723
Gso14g0141 478 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 106 183 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso14g0141 Gso-Chr14 1239097 1243275 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso14g0141 5 180 Eukaryotic Initiation Factors Gene Family AT2G23350 24.157 7.43e-10 59.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso14g0141 K14411 - gmx:100788515 944.495
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso14g0141 14 1239097 1243275 Gso2g2523 2 49620019 49623982 GST
Gso18g0692 18 7886447 7890816 Gso14g0141 14 1239097 1243275 PCT
Gso8g2692 8 44569565 44573999 Gso14g0141 14 1239097 1243275 PCT
Gso14g0141 14 1239097 1243275 Gso18g0692 18 7886447 7890816 PCT
Gso14g0141 14 1239097 1243275 Gso8g2692 8 44569565 44573999 PCT