Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso14g0139 ATGTGCAGTGATTCGAAAAGTAAACTTTCTTCCCCAACCCTCGTCGTCATGGAGAATAGTAACATTCAGAAGCAGAATCTGGATGGTCTCTACAACTCGGTTTTGCTTGAATTGTCTGCATCTGATGATTATGAAGCTTTCAAAAGAGAGGTGGAGGAAAAAGGCTTAGATGTGAACGAGGCAGGCTTTTGGTACGGTAGAAGAATTGGGTCAAAGAAGATGGGATCTGAAACGAGGACCCCTCTGATGATTGCTTCTTTGTTTGGAAGCGCTAAGGTGCTCAATTATATTCTTCTTCAGAAAGGAGGAGGTGTTGATGTGAACAGGGTCTGTGGTTCTGATAGGGCCACTGCTCTCCATTGTGCTGTTGCTGGTGGCTCCGAATCCTCACTTGAGATTGTCAAGCTCTTGCTTGATGCTGGGGCTGATGCTGAGTGCCTTGATGCGAGTGGCAACAAGCCGGTTAATCTGATTGCTCCTGCCTTTGATTCTTTGTCCAAATCGCGAAGGAAGGCTTTGGAGATGTTCCTCAGGGGTGGTGGGGAAAGAGATGAACTCATGAGCCAGGAGATGGAGCTACAGATGTTTTCTGTTCCAGAGAAAAAAGAAGGAAGTGATAATAAGAAAGAATACCCTGTTGATATATCGCTGCCTGACATCAACAACGGTGTATATGGAACAGATGAGTTTAGGATGTACAACTTCAAGGTGAAGCCTTGCTCAAGGGCTTACTCCCATGACTGGACTGAGTGTCCATTCGTTCATCCAGGGGAGAATGCGAGGAGGAGAGACCCACGGAAATACCCTTACAGCTGTGTTCCTTGCCCTGAGTTTCGCAAAGGGACCTGCCAGAAGGGTGATTCCTGCGAGTATGCTCATGGTGTTTTTGAGTCCTGGCTACATCCCGCCCAATACCGGACAAGGCTTTGCAAGGATGAGACGGGCTGTGCTAGAAAAGTATGCTTCTTTGCTCACAAACCTGAAGAGCTACGCCCTGTGTATGCTTCCACTGGGTCGGCTATGCCATCACCAAAATCCTATTCAGCTAGTGGACTTGACATGACAGCGATGAGTCCATTGGCTCTTAGTTCCACATCTTTGCCGATGCCAACTGTTTCAACCCCACCCATGTCTCCCTTGGCAGTAGCTTCATCTCCCAAGAGTGGAAGCATGTGGCAGAACAAAATAAACCTTACTCCACCATCGTTGCAGCTCCCTGGTAGCCGACTGAAGGCTGCTTTGAGTGCCAGGGATCTGGAGATGGAGATGGAACTGCTCGGTCTAGAAAGCCCTGCTCGCCAACAACAGCAGCAGCAGCAACAATTGATCGAAGAGATTGCCAGGATCTCTTCCCCATCTTTCCGGAGCAAGGAATTCAATAGGATTGTTGATTTGAATCCTACTAACCTTGATGACCTGTTAGCATCTGCTGACCCTTCTGTATTTTCTCAACTACATGGACTTTCTGTGCAACCTTCAACACCCACACAAAGTGGGCTTCAGATGCGCCAAAACATGAACCACCTCCGTGCGAGTTATCCATCCAACATCCCTTCCTCTCCTGTGAGGAAGCCCTCAGCTTTTGGGTTTGACTCATCAGCTGCTGTGGCAACTGCAGTGATGAATTCTAGGTCTGCTGCCTTCGCAAAGCGAAGCCAAAGTTTCATTGATCGTGGAGCTGCAACCCACCATCTTGGGCTGTCTTCAGCTTCCAACTCTTCTTGCAGGGTATCCTCTACCCTTTCAGATTGGAGTTCCCCTACCGGGAAACTGGATTGGGGTGTAAACGGAGACAAGCTGAACAAGCTGAGGAAATCTACTTCCTTTGGATTCAGAAACAGTGGGGTAACTGCATCCCCCATAGCACAGCCTGAATTTGGTGCTGAGCCGGATGTCTCATGGGTTCATTCATTGGTTAAAGATGTTCCCTCCGAGAGGTCTGAGATATTTGGTGCTGAGAAGCAACAATATGATCTCAGTAAAGAGATGCTTCCACCATGGATGGAGCAGCTGTATATAGAGCAGGAGCAGATGGTAGCATGA 2043 0.4821 MCSDSKSKLSSPTLVVMENSNIQKQNLDGLYNSVLLELSASDDYEAFKREVEEKGLDVNEAGFWYGRRIGSKKMGSETRTPLMIASLFGSAKVLNYILLQKGGGVDVNRVCGSDRATALHCAVAGGSESSLEIVKLLLDAGADAECLDASGNKPVNLIAPAFDSLSKSRRKALEMFLRGGGERDELMSQEMELQMFSVPEKKEGSDNKKEYPVDISLPDINNGVYGTDEFRMYNFKVKPCSRAYSHDWTECPFVHPGENARRRDPRKYPYSCVPCPEFRKGTCQKGDSCEYAHGVFESWLHPAQYRTRLCKDETGCARKVCFFAHKPEELRPVYASTGSAMPSPKSYSASGLDMTAMSPLALSSTSLPMPTVSTPPMSPLAVASSPKSGSMWQNKINLTPPSLQLPGSRLKAALSARDLEMEMELLGLESPARQQQQQQQQLIEEIARISSPSFRSKEFNRIVDLNPTNLDDLLASADPSVFSQLHGLSVQPSTPTQSGLQMRQNMNHLRASYPSNIPSSPVRKPSAFGFDSSAAVATAVMNSRSAAFAKRSQSFIDRGAATHHLGLSSASNSSCRVSSTLSDWSSPTGKLDWGVNGDKLNKLRKSTSFGFRNSGVTASPIAQPEFGAEPDVSWVHSLVKDVPSERSEIFGAEKQQYDLSKEMLPPWMEQLYIEQEQMVA* 681
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso14g0139 680 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 274 294 IPR000571 GO:0046872
Gso14g0139 680 Pfam Ankyrin repeats (3 copies) 77 145 IPR002110 GO:0005515
Gso14g0139 680 ProSiteProfiles Ankyrin repeat profile. 114 149 IPR002110 GO:0005515
Gso14g0139 680 PANTHER UNKEMPT FAMILY MEMBER 23 679 IPR045234 -
Gso14g0139 680 SMART ANK_2a 114 146 IPR002110 GO:0005515
Gso14g0139 680 SMART ANK_2a 77 109 IPR002110 GO:0005515
Gso14g0139 680 Gene3D - 30 175 IPR036770 -
Gso14g0139 680 ProSiteProfiles Zinc finger C3H1-type profile. 269 296 IPR000571 GO:0046872
Gso14g0139 680 ProSiteProfiles Ankyrin repeat region circular profile. 114 148 - -
Gso14g0139 680 SUPERFAMILY Ankyrin repeat 28 158 IPR036770 -
Gso14g0139 680 SMART c3hfinal6 269 295 IPR000571 GO:0046872
Gso14g0139 680 SMART c3hfinal6 304 327 IPR000571 GO:0046872
Gso14g0139 680 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 29 23 679 - -
Gso14g0139 680 Gene3D - 270 332 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso14g0139 Gso-Chr14 1221279 1224434 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso14g0139 33 675 C2H2 Transcription Factor Family AT5G12850 39.859 1.34e-140 426
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Gso14g0139 Ank_2 1.3e-06 CL0465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso14g0139 - - gmx:100783376 1323.15