Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso14g0133 ATGGATTCTCCCTACACAAGTATAGTCTTTGATAAAATTCAGAAATTTGAGCCAGAGAATGCTAGAAAGATAATTGGCTATCTCTTCTTTCAAGGCCATGGAGAACAAGAAATGGCTAAATTGGCTTCATGCCCTGACTATTTCATCCGTGAAGTGGCAGTTCAGGCTAGAAAGGAACTCCAAAGGTTGGCTGCTAAACCAGATATGCTTGCAATGTCACTTACTGTAAACCCTCAGCATGGTTTAAGTGATTTATCAGTAATCTCCCCTAGAACTCCTACTTCACCAAACTTTCAGGTGCCTCCTCCCTATTGGGATCCACAATCTGCTGGCAATGTCAATCCGGACTTTATGGGAATGAATTACTTGGATTCTATTGTAGAACTTCAGAAGCAGACACAGATGCTTACTTTGGAGAATCAAATAGATGCTGTAAAAACTGGGACTGGAGGGATTGCCAATGATTACTATGGCTTAGATGCTTCTGCTGCCAATTTGGGTGGAAAAGCTGGGAGAAGGTTTTCTGAATTTCCAATGAAGATATGTCACTATTTCAACAAAGGATTCTGTAAGCATGGAACTAGCTGCAGATTCTATCATGGGCAAGTTGTCCCTGAGAATTTCTCTCAGATGTATGGAAATGATGCTATTAGTGAGGATCAGGTGATTTCACCGGGGTCACTGGCACAGTTAGAGTCTGAAATTATTGAGCTCCTAAGAACAAAAGGTGGTCCAATGTCAATTGCTTCCCTGCCAATGGCATACTACGATAAATATAAAAAGGTACTGCAAGCAGATGGTTATTTAACCGAGAGCCAGAGGCATGGTAAGTCTGGCTATAGTTTGACGAAGCTTCTTGCACGACTGAACAATAGTATTCGGCTAATAGGCAGACCTCATGGACAGCATTCAGTGGTTCTGGCAGAAGATGCTCCCACACAAATGCAAAAGGGAGATTTTGCTCGAAATATCAGTGCTTCACGGCAAATATATCTGACGTTCCCAGCTGACAGCACTTTCACAGAGGATGATGTCTCAAACTACTTCAACACATTTGGACCTGTTGCAGATGTCAGAATTCCTAACCAGCAGAGAAGGATGTTTGGATTTGTGACATTTGTTCATTCAGAAACTGTCAAAACTGTTTTGGATAAGGGCAATCCCCATTGTGTTCGGGGTTCTCGGGTGCTTGTGAAACCTTACCAGGAGAAGGCAAAGGTTAATGAAAGGAAGTACACAGATAGAATTGAGCACCCTGTTTGTTATTCACCACACTATGTAGATATCGACACTGAACTTAACTCAATTCCAAGAAGTTTTGGGAACCATATATCCATTAGGAGACAGCTACAACTAATCGAAGAGGAAGAGCAGGGGCGATCCCTGGAACTTAAGAAGAGAAGTCTTGCACAGCTGCCGTTTGCCCAAAAATATTTCTTCAGTTCACCTCATTTTGGCTTCTCCATGGATGAGTCAAGGATTTCAGATGATCACTTCAATTTCCAGCCTGCAGAAGAATCTTTCAGTTTTCCACTGCATGCCAAATCCAGGCATACAGACTCCAATTACTCTGATGAGGACAGCAATCAAGGACTCAATCTCCCGGACAGTCCATTCGCATTTCCACTAGATAGTGGGATGTAA 1644 0.4246 MDSPYTSIVFDKIQKFEPENARKIIGYLFFQGHGEQEMAKLASCPDYFIREVAVQARKELQRLAAKPDMLAMSLTVNPQHGLSDLSVISPRTPTSPNFQVPPPYWDPQSAGNVNPDFMGMNYLDSIVELQKQTQMLTLENQIDAVKTGTGGIANDYYGLDASAANLGGKAGRRFSEFPMKICHYFNKGFCKHGTSCRFYHGQVVPENFSQMYGNDAISEDQVISPGSLAQLESEIIELLRTKGGPMSIASLPMAYYDKYKKVLQADGYLTESQRHGKSGYSLTKLLARLNNSIRLIGRPHGQHSVVLAEDAPTQMQKGDFARNISASRQIYLTFPADSTFTEDDVSNYFNTFGPVADVRIPNQQRRMFGFVTFVHSETVKTVLDKGNPHCVRGSRVLVKPYQEKAKVNERKYTDRIEHPVCYSPHYVDIDTELNSIPRSFGNHISIRRQLQLIEEEEQGRSLELKKRSLAQLPFAQKYFFSSPHFGFSMDESRISDDHFNFQPAEESFSFPLHAKSRHTDSNYSDEDSNQGLNLPDSPFAFPLDSGM* 548
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso14g0133 547 CDD RRM_AtC3H46_like 330 399 IPR034365 -
Gso14g0133 547 Gene3D - 328 409 IPR012677 -
Gso14g0133 547 SUPERFAMILY CCCH zinc finger 178 201 IPR036855 GO:0046872
Gso14g0133 547 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 179 202 IPR000571 GO:0046872
Gso14g0133 547 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 328 403 IPR000504 GO:0003723
Gso14g0133 547 ProSiteProfiles Zinc finger C3H1-type profile. 176 203 IPR000571 GO:0046872
Gso14g0133 547 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) 1 546 - -
Gso14g0133 547 Gene3D - 174 237 - -
Gso14g0133 547 PANTHER TRANSCRIPTION FACTOR C3H FAMILY-RELATED 1 546 - -
Gso14g0133 547 SMART rrm1_1 329 399 IPR000504 GO:0003723
Gso14g0133 547 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 339 395 IPR000504 GO:0003723
Gso14g0133 547 MobiDBLite consensus disorder prediction 519 547 - -
Gso14g0133 547 SUPERFAMILY RNA-binding domain, RBD 339 415 IPR035979 GO:0003676
Gso14g0133 547 SMART c3hfinal6 176 202 IPR000571 GO:0046872
Gso14g0133 547 Pfam OST-HTH/LOTUS domain 227 305 IPR025605 -
Gso14g0133 547 ProSiteProfiles OST-type HTH domain profile. 227 309 IPR025605 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso14g0133 Gso-Chr14 1180512 1186847 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso14g0133 - - gmx:100818984 1106.66
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso14g0133 14 1180512 1186847 Gso2g2531 2 49681408 49687885 GST
Gso18g0685 18 7771747 7776376 Gso14g0133 14 1180512 1186847 PCT
Gso8g2697 8 44640801 44645783 Gso14g0133 14 1180512 1186847 PCT
Gso14g0133 14 1180512 1186847 Gso18g0685 18 7771747 7776376 PCT
Gso14g0133 14 1180512 1186847 Gso8g2697 8 44640801 44645783 PCT