Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso14g0089 ATGCAATCCAAATCTGAAACTGCAAATCAACTGAGGTCTGATCCACGTTCCTTTGCACCTAACCAATCTTATTCTGAACCCTGGTGGCGAGGTATTCAGTGCAATCCTGTCCCCCAAGCAATGTCAGGAGTGAATATATCTAATTCATCTTCACTTGAACGCCCTAATGGTGATTCAGAATCCAGTGAAGAAGATGATGATGCCACTAAAGAACCACAACCCACTGCTCCTAATCAATCAGGAAATTATGGACAAGACTACCAAGCGTTGCAACATTCTTCATCATCTGCACCTTTGGTGCGTGATGATTGCCTTACACAGGCTCCACAACTGGAACTTGTTGGCCACTCAATTGGATACGCCCCTTTTATAGGAATGCCTCATGCCAGAATGGCTTTGCCCCTTGAGATGGCTCAAGAGCCTGTTTATGTGAATGCCAAACAATACCAAGGAATTCTGAGACGAAGACAGGCTCGTGCCAAAGCAGAGCTTGAAAAGAAATTAATAAAAGTCAGAAAGCCTTATCTTCATGAATCCCGGCATCAGCATGCTATAAGAAGAGCACGAGGTAATGGAGGGCGTTTTGCAAAGAAAACTGAAGTTGAGGCTTCAAACCACATGAATGAGGAAAAGGATATGGGTACTGGCCAAGTCCCATTGTCACGGTCAATTAGTTCATCTGGTTTTGGATCACTACCCTCTGATTCTGCCGAGACCTGGAATTCGCCTAGTGTGCAACAAGGTGCAAGAGGATCTCAAGTGCATGAGAGATTTGAAGAACGCAACTATGCAAATGTTTTGCAGTCATCATCTACTTCTTGTTTGCACTCGGGTGAAAGAGCGGAGGAAGGGGACTGTTCAGGTCAGCAACGGGGAAGCATCTCGTCGGAGCACACCTCACAGAGGCGTCTTGCTATTCAGTAA 924 0.4556 MQSKSETANQLRSDPRSFAPNQSYSEPWWRGIQCNPVPQAMSGVNISNSSSLERPNGDSESSEEDDDATKEPQPTAPNQSGNYGQDYQALQHSSSSAPLVRDDCLTQAPQLELVGHSIGYAPFIGMPHARMALPLEMAQEPVYVNAKQYQGILRRRQARAKAELEKKLIKVRKPYLHESRHQHAIRRARGNGGRFAKKTEVEASNHMNEEKDMGTGQVPLSRSISSSGFGSLPSDSAETWNSPSVQQGARGSQVHERFEERNYANVLQSSSTSCLHSGERAEEGDCSGQQRGSISSEHTSQRRLAIQ* 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso14g0089 307 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 37 298 IPR001289 GO:0003700|GO:0006355
Gso14g0089 307 MobiDBLite consensus disorder prediction 38 56 - -
Gso14g0089 307 ProSitePatterns NF-YA/HAP2 subunit signature. 143 163 IPR018362 GO:0003677|GO:0016602
Gso14g0089 307 MobiDBLite consensus disorder prediction 263 277 - -
Gso14g0089 307 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT A-9 37 298 - -
Gso14g0089 307 MobiDBLite consensus disorder prediction 218 251 - -
Gso14g0089 307 PRINTS CCAAT-binding transcription factor subunit B signature 141 163 IPR001289 GO:0003700|GO:0006355
Gso14g0089 307 PRINTS CCAAT-binding transcription factor subunit B signature 172 195 IPR001289 GO:0003700|GO:0006355
Gso14g0089 307 MobiDBLite consensus disorder prediction 288 307 - -
Gso14g0089 307 MobiDBLite consensus disorder prediction 1 95 - -
Gso14g0089 307 Gene3D - 138 200 - -
Gso14g0089 307 ProSiteProfiles NF-YA/HAP2 family profile. 138 198 IPR001289 GO:0003700|GO:0006355
Gso14g0089 307 SMART cbf3 137 198 IPR001289 GO:0003700|GO:0006355
Gso14g0089 307 MobiDBLite consensus disorder prediction 203 307 - -
Gso14g0089 307 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 140 195 IPR001289 GO:0003700|GO:0006355
Gso14g0089 307 MobiDBLite consensus disorder prediction 72 95 - -
Gso14g0089 307 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso14g0089 Gso-Chr14 808562 812370 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso14g0089 56 307 CCAAT-HAP2 Transcription Factor Family AT3G20910 46.237 3.03e-60 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Gso14g0089 CBFB_NFYA 5.1e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso14g0089 K08064 - gmx:100815617 590.497
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso14g0089 14 808562 812370 Gso2g2581 2 50047116 50050832 GST
Gso18g0606 18 6594864 6598722 Gso14g0089 14 808562 812370 PCT
Gso8g2776 8 45516509 45520270 Gso14g0089 14 808562 812370 PCT
Gso14g0089 14 808562 812370 Gso18g0606 18 6594864 6598722 PCT
Gso14g0089 14 808562 812370 Gso8g2776 8 45516509 45520270 PCT