Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso14g0058 ATGCAATCAGATAATGGCAAGTTATTTATCGGTGGGATATCATGGGACACAAATGAAGAGCGACTCAGGGAGTATTTCAGTACTTATGGGGAAGTTGTGGAAGCAGTGATAATGAAGGATCGGACAACAGGTAGAGCCAGGGGATTTGGTTTCGTTGTTTTCTCTGACCCAGCTATTGCAGAAATAGTCATAAAAGAGAAGCACAACATTGACGGAAGGATGGTTGAGGCGAAGAAAGCTGTTCCTAGGGATGATCAGAACATACTGAGTAGAAACAGTGGCAGCATCCATGGTTCTCCTGGTCCAGGTCGCACTAGAAAGATATTTGTTGGAGGTTTAGCATCAACAGTGACAGAGAGTGATTTCAAGAAGTACTTTGATCAGTTTGGGACTATAACAGATGTTGTAGTTATGTATGATCACAACACTCAGAGGCCAAGAGGTTTTGGATTTATCACTTATGATTCTGAGGAGGCAGTTGACAAGGTCTTACTTAAGACATTTCATGAATTGAATGGAAAAATGGTTGAGGTCAAGCGAGCAGTTCCTAAGGAGTTATCGCCAGGACCAAGCCGCACCCCACTCGGTGGATATAACTATGGTCTTACTAGGGTCAATAGTTTCTTAAATGGCTTCACTCAGGGGTATACTCCAAGTACTGTTGGAGGCTATGGACTTCGAGCGGATGATAGATTCAGTCCTGTTGCTGGTGGTCGAAGTGGATTTGCTCCATTTGGATCAGGTTATGGAATGAGCATGAATTTTGAACCTGGTTTGAATGCTGGATTTGGAGGGAATGCAAATTTCAATAGCAATCTTAGCTATGATCGGGGAATAAATCCTTATTTTATTGGCAGCTCCAATAGGTTTGGCAGTCCTGTTGGATATGAGAGTGGAAATGGAGGAAACAATTCTTTCTTCAGTTCCGTGACTCGAAATTTGTGGGGTAATGGTGGCCTTAGTTATGGAACAAGTTCTGCAAACTCCAATGCATACATTGGATCCGGGAGTGGGAGTGCTGGAGGGAACACATTTGGCAACACTGGAGTCAACTGGAGTTCTTCAGCAATTTCTGGGCAGCAGGGAGGAGGGAACAATATGTCACAAAGTAGTGGCAACCTGGGATATGGAGGTGGTGACAACAATTATGGTTTGGGGACTGGAGGGTATGGAAGAAGCTCTGGTGCCATTTTTGCACCAACATCTTCATACTCTGCATCAAATGGCGGTGTTGATGGGGCTTTTGCAGACTTTTACAATAATAGTTCAGTTTATGGGGACCCCACTTGGCGATCTTCAAATTCTGAGAGAGATGGATCTGGTCCCTTTGGTTATGGACTTGGTGGCGCAGCTTCAGATGTTTCTGCCAAGAGTTCTCCTGGTTATGTTGGTGGTTACACTGTTAATAAGAGGCAGCCAAATAGGGGAATCGCTACATAG 1440 0.4424 MQSDNGKLFIGGISWDTNEERLREYFSTYGEVVEAVIMKDRTTGRARGFGFVVFSDPAIAEIVIKEKHNIDGRMVEAKKAVPRDDQNILSRNSGSIHGSPGPGRTRKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRAVPKELSPGPSRTPLGGYNYGLTRVNSFLNGFTQGYTPSTVGGYGLRADDRFSPVAGGRSGFAPFGSGYGMSMNFEPGLNAGFGGNANFNSNLSYDRGINPYFIGSSNRFGSPVGYESGNGGNNSFFSSVTRNLWGNGGLSYGTSSANSNAYIGSGSGSAGGNTFGNTGVNWSSSAISGQQGGGNNMSQSSGNLGYGGGDNNYGLGTGGYGRSSGAIFAPTSSYSASNGGVDGAFADFYNNSSVYGDPTWRSSNSERDGSGPFGYGLGGAASDVSAKSSPGYVGGYTVNKRQPNRGIAT* 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso14g0058 479 Gene3D - 4 88 IPR012677 -
Gso14g0058 479 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 6 82 IPR000504 GO:0003723
Gso14g0058 479 SUPERFAMILY RNA-binding domain, RBD 104 201 IPR035979 GO:0003676
Gso14g0058 479 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 1-LIKE 1 479 - -
Gso14g0058 479 CDD RRM2_DAZAP1 104 183 IPR034131 GO:0003723
Gso14g0058 479 SMART rrm1_1 7 78 IPR000504 GO:0003723
Gso14g0058 479 SMART rrm1_1 107 179 IPR000504 GO:0003723
Gso14g0058 479 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 108 165 IPR000504 GO:0003723
Gso14g0058 479 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 8 69 IPR000504 GO:0003723
Gso14g0058 479 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 106 183 IPR000504 GO:0003723
Gso14g0058 479 SUPERFAMILY RNA-binding domain, RBD 3 104 IPR035979 GO:0003676
Gso14g0058 479 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 1 479 - -
Gso14g0058 479 MobiDBLite consensus disorder prediction 457 479 - -
Gso14g0058 479 CDD RRM1_hnRNPA_hnRNPD_like 8 78 - -
Gso14g0058 479 Gene3D - 103 189 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso14g0058 Gso-Chr14 529487 535851 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso14g0058 8 268 Eukaryotic Initiation Factors Gene Family AT1G71770 27.541 3.82e-15 76.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso14g0058 K14411 - gmx:100795907 870.922
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso14g0058 14 529487 535851 Gso2g2606 2 50275464 50281597 GST
Gso13g0087 13 2854398 2857253 Gso14g0058 14 529487 535851 PCT
Gso14g0058 14 529487 535851 Gso13g0087 13 2854398 2857253 PCT