Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso14g0027 ATGGAGATGCAACAACTCCTCAGTATGGGCTTCCCGGACGAGTTAGCCGCCCAAGCCTTGGCTGCCACCGGCGGCAAATCCACCGTGAAAGCCACCGAATGGATTCTCTCTCACAAGCCCAACTCTTCCACATTCCAGCCCAAGCTCGATCGCTTCTTCCATTCCCAATCACAAGAACATGACGAACCCTCCAAACGCCCCAAACCTTCTCCTTCTCCTTCTCCTTCTCCAGCACAACCACAACACTGGCCCTCTTTCTTCTTTAAGATCGCAGACAAGAAACACGCCAACACCCACATTCACGAACCCTTGTACGAGCGGTTGCGTCCCAGAACCCTTGACGACGTCGTCGGTCAGGAGCATCTCCTCGCCCCCAACTCCCTTCTTCGCTCCGCAATCCAACGCAACCGCCTCCCCTCCATCCTCCTGTGGGGCCCACCCGGCACCGGCAAGACCACTATCGCCAAAGCCATCGTCAACTCCACCCCTTCTACTAACTCTTACCGCTTCGTCTCCTTATCTGCCGTCACCAGCGGCGTCAAAGACGTCAGGGACGCCGTCGACGAGGCCAGAAAACTCAGACTCAAATCCAACCAAACCACCGTTCTCTTCGTGGACGAGGTTCACAGGTTCAACAAGTCCCAACAGGACTCTTTCTTACCCGTCATTGAAGATGGCAGCATTGTCTTCCTTGGGGCCACCACCGAAAACCCTTCTTTCCATTTGATCACCCCTCTCTTGTCTCGTTGCCGCGTACTCACTCTTAACCCTCTCCAACCCCATCACCTTGCCTTGCTTCTGAACCGCGCTGTCACTCACACTGACAAAGGGTTGATGCAGAGCGTGGGGGTTCATGTTGATGTGAGCGAGGAAGTTGTTGATTTTATAAGCAACAACTGTGATGGGGATGCTCGGGTGGCCTTGAATGCCTTGGAGATTGCAGCTGTTACCGCAGCTGCAAGGCTACAACAAGGGATGGAATTGGATCTTCACACGAACGAGGAATGCAAGGATGATGTTGCTGCTGCTGCTGCTGTTGTTGTTAGTGTTGCTGATGCAAAGGAGGCACTTCAGTGCAAGCATGTTGCTTATGATAAAGCTGGGGAAGAGCACTATAATGTAATCAGTGCGTTGCACAAGTCTATGAGGGGAAGTGATGCAAATGCAGCTATTTATTGGTTGGCAAGAATGTTAGAGGGGGGTGAAGAGCCTCTTTACATTGCACGCAGACTCATACGGTTTGCAAGTGAGGATGTTGGTTTGGCTGATCCGTTGGCTCTGAATCAGGCCGTCTCATGCTACCAAGCATGCCACTTCATAGGAATGCCAGAATGCAATGTCATTCTTGCTCAGTGTGTTGCTTACTTGGCCTTGGCACCTAAGTCTGTTGCTGTTTATCGAGCCATAGGAGCCGCTCAGAAGGCAGTGAGGGAATCGGCTGGACACAATGAGGGTGTGCCTCTCCATTTGAGGAATGCTCCAACCAAATTAATGAAGGACATTGGATATGGGAAGGGATACATCTACACTCCCGACAATCCCACCGCAACACAAACTTACTTACCACCATCACTTCTGGGTCACAAGTTCCTCGATTGGCCTGAGTGA 1608 0.5193 MEMQQLLSMGFPDELAAQALAATGGKSTVKATEWILSHKPNSSTFQPKLDRFFHSQSQEHDEPSKRPKPSPSPSPSPAQPQHWPSFFFKIADKKHANTHIHEPLYERLRPRTLDDVVGQEHLLAPNSLLRSAIQRNRLPSILLWGPPGTGKTTIAKAIVNSTPSTNSYRFVSLSAVTSGVKDVRDAVDEARKLRLKSNQTTVLFVDEVHRFNKSQQDSFLPVIEDGSIVFLGATTENPSFHLITPLLSRCRVLTLNPLQPHHLALLLNRAVTHTDKGLMQSVGVHVDVSEEVVDFISNNCDGDARVALNALEIAAVTAAARLQQGMELDLHTNEECKDDVAAAAAVVVSVADAKEALQCKHVAYDKAGEEHYNVISALHKSMRGSDANAAIYWLARMLEGGEEPLYIARRLIRFASEDVGLADPLALNQAVSCYQACHFIGMPECNVILAQCVAYLALAPKSVAVYRAIGAAQKAVRESAGHNEGVPLHLRNAPTKLMKDIGYGKGYIYTPDNPTATQTYLPPSLLGHKFLDWPE* 536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso14g0027 535 Pfam ATPase family associated with various cellular activities (AAA) 141 252 IPR003959 GO:0005524|GO:0016887
Gso14g0027 535 Gene3D - 91 256 IPR027417 -
Gso14g0027 535 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 100 325 IPR027417 -
Gso14g0027 535 Pfam MgsA AAA+ ATPase C terminal 384 530 IPR021886 -
Gso14g0027 535 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 1 38 IPR015940 -
Gso14g0027 535 CDD AAA 117 251 - -
Gso14g0027 535 Pfam AAA C-terminal domain 285 383 IPR032423 -
Gso14g0027 535 MobiDBLite consensus disorder prediction 55 81 - -
Gso14g0027 535 Pfam UBA/TS-N domain 4 35 IPR015940 -
Gso14g0027 535 Gene3D - 2 49 - -
Gso14g0027 535 Gene3D - 462 535 - -
Gso14g0027 535 PANTHER WERNER HELICASE-INTERACTING PROTEIN 1 FAMILY MEMBER 15 534 - -
Gso14g0027 535 SUPERFAMILY post-AAA+ oligomerization domain-like 368 531 IPR008921 GO:0003677|GO:0006260
Gso14g0027 535 Gene3D - 258 333 - -
Gso14g0027 535 SUPERFAMILY UBA-like 3 42 IPR009060 GO:0005515
Gso14g0027 535 Gene3D - 358 461 - -
Gso14g0027 535 SMART AAA_5 137 258 IPR003593 -
Gso14g0027 535 CDD HLD_clamp_RarA 258 336 - -
Gso14g0027 535 SMART uba_6 1 37 IPR015940 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso14g0027 Gso-Chr14 325560 327570 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso14g0027 101 312 Core DNA Replication Machinery Family AT1G63160 28.378 1.21e-11 64.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso14g0027 K07478 - gmx:100799257 1029.24