Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso14g0023 ATGCTAATCATAATTAAATCAAAATCAAAATATAATATAATACATTATGGCGTTTGGGCATTTGATGCCGTGAGTGTAACTGTTTTGCCAAAGCGTTTCCTTGGATGGAAAATAGAGACATGTACTGGAAATGAAAAGAGTAACAAGGCCTCCCGGATTCCTCAGTCTAGACGACCTAATTTATCCTCACTGCAAATACCAGCATGGTCACTAGATATTGCATTATCTACTTTTGCAAAGACTGATGGTCCTTCGGTTTCACGATCAAGTCCTGGTTCCACAAGAGGACTTCCCCCAAGGCCAAATTCAGCCAAAGTCAGGTCTTCAATGAGAGGTTTACTTCCTCAGAGGAGCTTCAAGATAAATGCCTGTTCCCAGGATATTGAAAGGACAGGTCTCATAGTTCCCAACACTCCCCCATCAGATGCTCCTTTGGACAAACCTTCCACTTCAACTTCTCTGTCTCTTAATAATAGGGTTATCTCCCCATCAACAAAAGTTTCACATTCATTACCAGTTACTCCATTTGCAACTTCAAGTGCAGAGAATGAACATGGAAGACATCTAGGGCGTGATTCTGATTTAAGTACAATGGAAGTTCATCAGCATATGACACGATCATTTTCAGTCCCAGTTGATGGCAAAGCCACTAATTTAAGGGTTACAGATTCTAGGGGCTTGATTCGTGTAATTTCAGCAAAACGACATCTTGAAACTGTTGGTGGAAAGTCAACTGATGGTGCTTTCGTTCCAGAGATTGCCATTGAAGATGCTACTGAGGATATTCCAGAGGAACAAGCAGTTTGCAGGATTTGTTTGGTGGAGCTTGGGGAAGGAGGGAATACACTTAAGATGGAATGCAGTTGTAAAGGTGATCTTGCACTTGCTCACCAAGAATGTGCAGTAAAGTGGTTTAGTATTAAGGGAAACAGGACCTGTGATGTCTGCAAGCTGGATGTCCAGAACCTCCCAGTAACACTGTTGAAAATTTATAATCCTCTAACTCCTGCTAGGCAGGCATCAAATGTGCCACAACAGTCAGAAATAGTTTATTACAGGATCTGGCAGGATGTACCAGTACTTATCTTGGTCAGCATGCTTGCGTACTTTTGTTTTCTAGAGCAACTACTGGTTTCAGATTTGGGACCTCGTGCTCTTGCCATTTCATTACCATTCTCCTGTGTTTTAGGTCTCCTTTCATCTATGATTGCATCAACCATGGTGAGCAGGAGTTTCGTATGGGCTTATGCTTGCTTCCAGTTTGCAACTCTTATCCTGTTAGCTCATGTATTTTATACTATTCTCAATTTTAATGCAATTCTCTCCATTCTCCTTTCTACGTTCACTGGATTTGGGATTGCCATCAGTATGAATTCTCTCGTTATGGAATTCATCGGATGGAGAACTAGCAGGCAGGTTCAATCCTCCTTTGTAAATGTTAACTGGACAGAGCAGCAGCATCGTGAGCATGTACAAGAACAGGGACAGGAAGATGGAGGACAACATCAGCGACAAAGACAACAAGAGCATCATCTGCCGCAGCATGGCAACAGTTGA 1557 0.4213 MLIIIKSKSKYNIIHYGVWAFDAVSVTVLPKRFLGWKIETCTGNEKSNKASRIPQSRRPNLSSLQIPAWSLDIALSTFAKTDGPSVSRSSPGSTRGLPPRPNSAKVRSSMRGLLPQRSFKINACSQDIERTGLIVPNTPPSDAPLDKPSTSTSLSLNNRVISPSTKVSHSLPVTPFATSSAENEHGRHLGRDSDLSTMEVHQHMTRSFSVPVDGKATNLRVTDSRGLIRVISAKRHLETVGGKSTDGAFVPEIAIEDATEDIPEEQAVCRICLVELGEGGNTLKMECSCKGDLALAHQECAVKWFSIKGNRTCDVCKLDVQNLPVTLLKIYNPLTPARQASNVPQQSEIVYYRIWQDVPVLILVSMLAYFCFLEQLLVSDLGPRALAISLPFSCVLGLLSSMIASTMVSRSFVWAYACFQFATLILLAHVFYTILNFNAILSILLSTFTGFGIAISMNSLVMEFIGWRTSRQVQSSFVNVNWTEQQHREHVQEQGQEDGGQHQRQRQQEHHLPQHGNS* 519
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso14g0023 518 SUPERFAMILY RING/U-box 265 320 - -
Gso14g0023 518 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 254 324 IPR013083 -
Gso14g0023 518 MobiDBLite consensus disorder prediction 488 518 - -
Gso14g0023 518 CDD RING_CH-C4HC3_MARCH 269 317 - -
Gso14g0023 518 PANTHER OS02G0165000 PROTEIN 45 495 - -
Gso14g0023 518 MobiDBLite consensus disorder prediction 488 511 - -
Gso14g0023 518 Pfam RING-variant domain 269 316 IPR011016 GO:0008270
Gso14g0023 518 PANTHER OS02G0165000 PROTEIN 45 495 - -
Gso14g0023 518 MobiDBLite consensus disorder prediction 80 97 - -
Gso14g0023 518 MobiDBLite consensus disorder prediction 80 107 - -
Gso14g0023 518 MobiDBLite consensus disorder prediction 136 156 - -
Gso14g0023 518 SMART ringv_2 268 317 IPR011016 GO:0008270
Gso14g0023 518 ProSiteProfiles Zinc finger RING-CH-type profile. 261 323 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso14g0023 Gso-Chr14 305500 312455 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso14g0023 252 323 C3H Transcription Factor Family AT2G37950 45.205 4.32e-13 66.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso14g0023 - - gmx:100798208 993.801
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso14g0023 14 305500 312455 Gso2g2638 2 50465976 50472737 GST
Gso20g0495 20 24658953 24672553 Gso14g0023 14 305500 312455 PCT
Gso14g0023 14 305500 312455 Gso20g0495 20 24658953 24672553 PCT