Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso14g0015 ATGAAGAGGGAGTGTGGCGAAGCGAGTTCTTGTTCACGCAAGAAGCAGAAGCGGTTAATGGAGGATGCAGGAGCACGTCCCTGCACGGAGTGCGGCAAGAAGTTCTGGTCGTGGAAGGCACTCTTCGGCCACATGAGATGCCACCCAGAGCGTCACTGGAGAGGGATCAATCCTCCGGCCAATGTGGTCAGGAGACAACAAGAACAAGAACAAATGAGCCAGGAAGACCACGAGGTCGCTGCCTCTCTGCTCCTGCTTGCCAACTCCAACGTTCTGGAGAGTGATGGGCACAAGTGCAGCATTTGCCTCAGGGTTTTCTCTACTGGTCAGGCTCTTGGTGGCCACAAGCGCTGTCACTGGGACTCTTCTTCTTCCAAGTCTCTCTCTGTCCTCGACTTCGACTTGAATTTCCCTCCCCCCCTCACTCTCGATTTGAGGTTGGGTCTCTAG 450 0.5489 MKRECGEASSCSRKKQKRLMEDAGARPCTECGKKFWSWKALFGHMRCHPERHWRGINPPANVVRRQQEQEQMSQEDHEVAASLLLLANSNVLESDGHKCSICLRVFSTGQALGGHKRCHWDSSSSKSLSVLDFDLNFPPPLTLDLRLGL* 150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso14g0015 149 Pfam C2H2-type zinc finger 26 50 - -
Gso14g0015 149 Pfam C2H2-type zinc finger 97 121 - -
Gso14g0015 149 ProSitePatterns Zinc finger C2H2 type domain signature. 28 48 IPR013087 -
Gso14g0015 149 ProSiteProfiles Zinc finger C2H2 type domain profile. 26 48 IPR013087 -
Gso14g0015 149 Gene3D Classic Zinc Finger 27 119 - -
Gso14g0015 149 PANTHER ZINC FINGER PROTEIN ZAT2-RELATED 13 90 - -
Gso14g0015 149 PANTHER ZINC FINGER PROTEIN ZAT2-RELATED 94 141 - -
Gso14g0015 149 ProSiteProfiles Zinc finger C2H2 type domain profile. 97 124 IPR013087 -
Gso14g0015 149 SUPERFAMILY beta-beta-alpha zinc fingers 27 119 IPR036236 -
Gso14g0015 149 PANTHER ZINC FINGER PROTEIN ZAT2-RELATED 94 141 - -
Gso14g0015 149 PANTHER ZINC FINGER PROTEIN ZAT2-RELATED 13 90 - -
Gso14g0015 149 SMART c2h2final6 97 119 IPR013087 -
Gso14g0015 149 SMART c2h2final6 26 48 IPR013087 -
Gso14g0015 149 ProSitePatterns Zinc finger C2H2 type domain signature. 99 119 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso14g0015 Gso-Chr14 242152 242601 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso14g0015 28 149 C2H2 Transcription Factor Family AT4G35280 38.346 2.89e-16 71.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gso14g0015 zf-C2H2_6 2.2e-12 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso14g0015 - - gmx:102665516 296.975