Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso14g0014 ATGGAGTATGGTGGGTTTGGGAGCCTGTCGGAGTGCGAAGAAGAGTTGATTGAAGAGTTGCTGGTACAGGGATGCTGGGTGGAAACGAGTGGGAGAAGCGAGGAAATGCCCATGGGGAAGACATGGTGGATTGGACCAAAGGCTAATCATGCATCCGTCAAAGAAAGACTAGAGGCTGCGATGGGATACTTGAGAGAATACACAAACAACAACATTCAGATATGGGTTCCCCTGAGGAGGAGCGCAGGCCAGGAGCTTGGGACTGATGAGTCGGATACGATTGCTTTTGAAAGGAACAGGAACGTAAAGCTTAGGTTGTTTAGAAGCCAAGAGGGATGTGTGGGGGTTCCTGTGTTGGAAAGAGGGAGTGGCACATGCCTGGGTGTACTAGAGATAGTAATGGAGGATGAGGTAGTGAGTGAGATGATGGAGGTGGTGAGGTGTGTGTGCAAGGCGCAGAAGGTGCCTTTGGCACTGGCATGGGCTCCATGCGTCCAACAGAAGCAAGCCAAGTACTGCGGGCATTCAAGGGATGAGAGCTATGTGTCGACTGTGGAGAGAGCGTGCTTTGTCGGAGAAGAGAACCCCCAGCTGTTGGGCTTCCAGGAGGCCTGCTCTCAGCATCACCTTTTCCGCGGACAAGGAGTTGTTGGGACTGCCTTGGCAACAGCCAAGCCCTGTTTCGCCACCGACATAACCGCCTTCTCCAACGCCGAATATCCTCTCTCCCACCACGCCTCCATCTTTGACTTGCATGCTGCTGTCGCTATTCCTCTTACTACTTTCTCTTCCTCTTTTCATTTTGTCTTGGAGTTCTTCCTTCCCCTAGACTGCCCTGACCACAACCACTTCCTCAACTCTTTATCCCTTCTCCTTCACCAAGCTTGCCGCTCCACCTTCCATCTTTCTCTCATCCATGATCACCATCTTGATTTTGAATTCTTGCCTACTGAATCCCCTTCCCAGGCCTCCTGGATTGCACACATGATGGAGGCCCAGTCCCAACACATTAAAGGCGTGTGCTTGTCCTTGGAAGAAGAACCCAAAGAGGAGTTCAAAGTCACCACAACCCACTACTGCAACTGGGACAGTACTGCCACCAGTACTTATCAGGCACATGACCAGGTCGTGTTTGGGGAAGAATCTCACACTCACACATTTGGTGGGAAGCGTGGCAGAAAACCAGGCGAGAAGAGACGAACCAAGGCCGAGAAGACTATCAGCTTGCCAGTTCTAAGACAGTACTTTGCAGGAAGCCTAAAAGATGCGGCAAAGAGCATTGGCGTGTGTCCCACGACTCTGAAAAGGATATGCAGACAGCACGGCATAACGAGGTGGCCTTCAAGGAAAATCAAGAAGGTGGGCCACTCTTTGAAGAAACTTCAACTTGTAATCGATTCAGTGCAGGGTGCCGAGGGTGCCATACAGATCGGCTCCTTCTACAACAGTTTTCCGGAGTTGAGTTCTCAATCATCCAAGTCCAACAACAACAACAACTCATCCTCTCCTACAGCAGCAGCAGCAGCAGCACAAAGCCCTCAACAACCCTTGAGAGTGAAGGCTACTTTTGCGGATGAAAAAATCCGTTTTAGCTTGCAACCACATTGGGGGTTCACAGAATTGCAGCTGGAAATCGCAAGGCGCTTCAACCTAAACGATGTGAGCAACGGCTACTTGGTTCTAAAGTATTTGGATGATGACGGGGAGTGGGTTGTTTTAGCCTGCGATGGTGATCTTGAGGAGTGTAAAGACTTGCATACAACATCTCAGAGCCGCACAATTAGACTCGCCCTATTTCAAGCTTCTCCTCTTAATAATCTACCAAATACATATACTTTTGCCGCGGCTACCCCTTCTTCCAGCCTCGCCGTCTCTCTTTAG 1881 0.5024 MEYGGFGSLSECEEELIEELLVQGCWVETSGRSEEMPMGKTWWIGPKANHASVKERLEAAMGYLREYTNNNIQIWVPLRRSAGQELGTDESDTIAFERNRNVKLRLFRSQEGCVGVPVLERGSGTCLGVLEIVMEDEVVSEMMEVVRCVCKAQKVPLALAWAPCVQQKQAKYCGHSRDESYVSTVERACFVGEENPQLLGFQEACSQHHLFRGQGVVGTALATAKPCFATDITAFSNAEYPLSHHASIFDLHAAVAIPLTTFSSSFHFVLEFFLPLDCPDHNHFLNSLSLLLHQACRSTFHLSLIHDHHLDFEFLPTESPSQASWIAHMMEAQSQHIKGVCLSLEEEPKEEFKVTTTHYCNWDSTATSTYQAHDQVVFGEESHTHTFGGKRGRKPGEKRRTKAEKTISLPVLRQYFAGSLKDAAKSIGVCPTTLKRICRQHGITRWPSRKIKKVGHSLKKLQLVIDSVQGAEGAIQIGSFYNSFPELSSQSSKSNNNNNSSSPTAAAAAAQSPQQPLRVKATFADEKIRFSLQPHWGFTELQLEIARRFNLNDVSNGYLVLKYLDDDGEWVVLACDGDLEECKDLHTTSQSRTIRLALFQASPLNNLPNTYTFAAATPSSSLAVSL* 627
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso14g0014 626 PANTHER PROTEIN NLP8 137 604 IPR045012 GO:0003700
Gso14g0014 626 PANTHER PROTEIN NLP8 105 137 IPR045012 GO:0003700
Gso14g0014 626 PANTHER PROTEIN NLP8 32 99 IPR045012 GO:0003700
Gso14g0014 626 CDD PB1_NLP 517 600 IPR034891 -
Gso14g0014 626 ProSiteProfiles PB1 domain profile. 516 601 IPR000270 GO:0005515
Gso14g0014 626 SUPERFAMILY CAD & PB1 domains 512 603 - -
Gso14g0014 626 Pfam RWP-RK domain 407 454 IPR003035 -
Gso14g0014 626 PANTHER PROTEIN NLP2 137 604 - -
Gso14g0014 626 PANTHER PROTEIN NLP2 32 99 - -
Gso14g0014 626 PANTHER PROTEIN NLP2 105 137 - -
Gso14g0014 626 MobiDBLite consensus disorder prediction 488 513 - -
Gso14g0014 626 ProSiteProfiles RWP-RK domain profile. 393 474 IPR003035 -
Gso14g0014 626 SMART PB1_new 516 601 IPR000270 GO:0005515
Gso14g0014 626 Gene3D - 512 603 - -
Gso14g0014 626 MobiDBLite consensus disorder prediction 381 403 - -
Gso14g0014 626 Pfam PB1 domain 517 600 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso14g0014 Gso-Chr14 223681 226011 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso14g0014 38 595 NLP Transcription Factor Family AT1G76350 34.951 1.15e-116 365
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Gso14g0014 PB1 4.2e-14 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso14g0014 - - gmx:100796074 1192.95
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso14g0014 14 223681 226011 Gso2g2644 2 50591745 50594677 GST