Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g1615 ATGCGAACTTCATGGGCTGATTTGGCTGCCAATTCGGCGCCTGAAAATGCGGGAACCTCTAACTCCACAGCTCCTTCGCGGCCGGTTTATGTGCCTCCGCATCTGAGAAACCGTGGACCATCGGAATCCCCTGCTCCACCACCTACATCAAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATGCGGGATCACGGTGGGGTGCTCTGCCAGCCAGAAACGGATGGGGCAACAGAAGTTGTGGTAGTTGGGATCGGCGCGAAGTGAATCCCTTCGGGGATCAGGAGGAGGCAGCAGCAGCGTTTGGCGGCGAGGAGCAGCAGGAAAACACGGGAATTAACTTCGATGCGTATGAGGACATTCCGGTGGAGACGAGCGGTGAAAACGTGCCCCCGGCTGTGAATACTTTTGCGGAGATTGACTTGGGCGACGCGCTTAGTCAGAACATTAGACGCTGCAAATATGTGAAGCCAACGCCGGTTCAGCGGCATGCCATACCGATATCCCTTGCGGGACGGGATTTGATGGCTTGTGCGCAGACTGGTTCCGGAAAGACTGCAGCATTCTGTTTCCCAATCATCAATGGGATTATGAGAGGCCAAGCCCAACCCCTCCAGAGGCCCCCTCGCGGCGTCCGCATAGTCTACCCACTTGCCCTTGTTCTCTCACCAACTAGGGAGCTATCCATGCAGATACATGAAGAGGCTAGAAAGTTTTCATACCAGACAGGGGTTAGGGTCGTTGTTGCTTATGGTGGAGCTCCAATTAATCAGCAGCTCCGGGAACTTGAGAGAGGGGTGGATATCCTTGTTGCAACTCCAGGAAGATTGGTAGATTTACTGGAGAGAGCTAGAGTTTCATTGCAGATGATCAGATATTTGGCCTTAGATGAGGCAGATAGAATGCTGGATATGGGTTTTGAGCCACAAATAAGGAAGATTGTAGAACAAATGGACATGCCCCCAGCAGGTGCCAGACAGACTATGCTGTTCAGTGCTACATTTCCAAAAGAGATACAGAGACTTGCCTCTGATTTCCTTTCAAATTATATTTTTCTGGCTGTTGGAAGAGTGGGCTCAAGTACTGATTTAATTGTCCAAAGAGTTGAGTATGTTCAAGAGTCTGACAAGAGAAGTCACCTCATGGATCTTCTTCATGCACAGAAGGCAAACGGTGTACAAGGAAAGCAAGCTTTGACTTTAGTTTTTGTGGAGACAAAGAAGGGAGCTGATTCTCTAGAGCACTGGTTGTGCCGTAATAGTTTTCCAGCAACTACTATTCATGGTGACAGGACACAACAGGAAAGAGAATTGGCATTAAGGTCATTTAAAAGTGGCAACACCCCCATATTGGTTGCAACTGATGTGGCTGCACGTGGTCTTGATATTCCTCATGTTGCCCATGTGGTTAACTTTGACCTTCCTAATGATATTGATGATTATGTACACCGAATTGGAAGGACAGGGCGAGCAGGAAAGAAAGGCCTGGCAACTGCATTCTTTAATGACAACAATGCATCCCTAGCAAGGGCTTTAGCAGATCTGATGCAAGAAGCAAATCAAGAAGTGCCTGATTGGCTCTCACGGTATGCTGCTCGCTCTTCCTTTGGTGGTGGAAGGAACCGTCGATCAGGAGGAAGCCGTTTTGGTGGCCGTGACTTTCGAAGAGAGGGTTCTTTTAGTAGGGGTGGTTCTGATTACTACAGTGCAGGAAACAACAGTAGTGGATATGGCAATTCTGGTGTGTATGGTGCAGGATACGGTCCTGGGGTAACCAGTGCTTGGGACTGA 1809 0.4787 MRTSWADLAANSAPENAGTSNSTAPSRPVYVPPHLRNRGPSESPAPPPTSNNNNNNNNNNNNNNNNNNAGSRWGALPARNGWGNRSCGSWDRREVNPFGDQEEAAAAFGGEEQQENTGINFDAYEDIPVETSGENVPPAVNTFAEIDLGDALSQNIRRCKYVKPTPVQRHAIPISLAGRDLMACAQTGSGKTAAFCFPIINGIMRGQAQPLQRPPRGVRIVYPLALVLSPTRELSMQIHEEARKFSYQTGVRVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVEQMDMPPAGARQTMLFSATFPKEIQRLASDFLSNYIFLAVGRVGSSTDLIVQRVEYVQESDKRSHLMDLLHAQKANGVQGKQALTLVFVETKKGADSLEHWLCRNSFPATTIHGDRTQQERELALRSFKSGNTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKKGLATAFFNDNNASLARALADLMQEANQEVPDWLSRYAARSSFGGGRNRRSGGSRFGGRDFRREGSFSRGGSDYYSAGNNSSGYGNSGVYGAGYGPGVTSAWD* 603
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g1615 602 CDD DEADc_DDX3_DDX4 142 365 IPR044763 GO:0003724|GO:0005524
Gso13g1615 602 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 224 516 IPR027417 -
Gso13g1615 602 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE-LIKE PROTEIN 47 574 - -
Gso13g1615 602 Gene3D - 362 541 IPR027417 -
Gso13g1615 602 SMART helicmild6 417 498 IPR001650 -
Gso13g1615 602 CDD SF2_C_DEAD 371 507 - -
Gso13g1615 602 SMART ultradead3 160 374 IPR014001 -
Gso13g1615 602 Gene3D - 98 361 IPR027417 -
Gso13g1615 602 MobiDBLite consensus disorder prediction 1 77 - -
Gso13g1615 602 Pfam Helicase conserved C-terminal domain 383 498 IPR001650 -
Gso13g1615 602 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 141 169 IPR014014 GO:0003724
Gso13g1615 602 Pfam DEAD/DEAH box helicase 165 348 IPR011545 GO:0003676|GO:0005524
Gso13g1615 602 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 370 537 IPR001650 -
Gso13g1615 602 MobiDBLite consensus disorder prediction 1 27 - -
Gso13g1615 602 MobiDBLite consensus disorder prediction 541 563 - -
Gso13g1615 602 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 172 359 IPR014001 -
Gso13g1615 602 MobiDBLite consensus disorder prediction 48 73 - -
Gso13g1615 602 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 47 574 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g1615 Gso-Chr13 31363710 31372254 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso13g1615 125 530 Eukaryotic Initiation Factors Gene Family AT3G19760 30.488 3.78e-61 206
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g1615 K11594 - gmx:100784557 1068.14
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g0008 18 112938 117155 Gso13g1615 13 31363710 31372254 GST