Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g1592 ATGGTTTCTTATACAAGTTATTTCATTTATAGAAGAGCAGAGAACCCATTGCAAATCCTTAAATTTCGTAGCATCTTCTTTTTCTCACTGGAAGCTACATGTTGGCAAACATACGGTACCTTGAGACATTGTCATTCTGGGTCAGAACGGGGTAAAAATCAGAAATTGACAAACAGGGTGGGGCTTTTCTGGGACTTGGACAATAAACCACCCAATTCAATCCCACCTTATGAAGTTGCCAATAAGCTGAGAATAGCTGCATCTTCCTTTGGTGTTGTTCGTTATATGGTGGCTTATGCAAATAGCCACACTTTTAGCCATGTCCCTCAAGGTGTCCGGGAGAGTAGGAAAGAGAAGGAACTGTTGTATCGTTTAGAGAATAAGGGTGTCATCAAGCCAAATCAACCTTATCGTTGTAAGGTTTGTGGGAGAAAGTTTTATACTAATGACAAGCTTGTTAACCATTTCAAGCAACTGCATGAGAGTGAGCACACGAAAAGGATGAACCAGATAAAGTCTGCTAGGGGGAGCAGGAGGGTGAAGTTGGTGGCCAAGTATTCTATGAAAATGGAAAAGTATAAGAAGGCTGCAAGTGATATTCTCACTCCCAAAGTGGGGTACGGTTTGGCGGATGAGCTCAAACGGGCTGGTTTTTGGGTTCGAACAGTGTCGGATAAGCCACAAGCTGCAGATCAAGCACTGCAAAGCCACATTGTGGATATCATGGATCATAGGCGGGTTGAGTGTGTGGTCCTTGTGTCTGATGATTCTGATTTTGTTGATGTGATAAACGAAGCAAAGATGCGATGTCTGAAGACGGTTGTCATTGGGGATATTGATGAAGGTTTCTTGAAGAGGACTGCTGATACTGCATTTTCTTGGGAGGAAATTCTGATGGGGAAAGCTAAAAAGCAGGCTGTTTCGGTTGTGAAAAACTGGAAGGATCGTGATATCTTAAAAAAGTTGGAGTGGACATACAACCCTGATGAGGATAAAAGTAATTTCAATCTGGATGATACCGTTACTGAAGCATCTGAAGATGATAATATTGAAGATACTACCTGTGATGAAGTTGATGATGCCTATAAGGATGACAGAGGTTCTTGGTGGGAATTAGATTCTGATGATGATGCCACAACTAGACAGTCAGGAAAATTATCTGGTTTATCGGTGAATAGGTGA 1182 0.4179 MVSYTSYFIYRRAENPLQILKFRSIFFFSLEATCWQTYGTLRHCHSGSERGKNQKLTNRVGLFWDLDNKPPNSIPPYEVANKLRIAASSFGVVRYMVAYANSHTFSHVPQGVRESRKEKELLYRLENKGVIKPNQPYRCKVCGRKFYTNDKLVNHFKQLHESEHTKRMNQIKSARGSRRVKLVAKYSMKMEKYKKAASDILTPKVGYGLADELKRAGFWVRTVSDKPQAADQALQSHIVDIMDHRRVECVVLVSDDSDFVDVINEAKMRCLKTVVIGDIDEGFLKRTADTAFSWEEILMGKAKKQAVSVVKNWKDRDILKKLEWTYNPDEDKSNFNLDDTVTEASEDDNIEDTTCDEVDDAYKDDRGSWWELDSDDDATTRQSGKLSGLSVNR* 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g1592 393 Gene3D Classic Zinc Finger 114 199 - -
Gso13g1592 393 ProSitePatterns Zinc finger C2H2 type domain signature. 139 160 IPR013087 -
Gso13g1592 393 Pfam NYN domain 209 277 IPR021139 GO:0004540
Gso13g1592 393 ProSiteProfiles Zinc finger C2H2 type domain profile. 137 165 IPR013087 -
Gso13g1592 393 PANTHER ZINC FINGER (C2H2 TYPE) FAMILY PROTEIN 43 380 - -
Gso13g1592 393 CDD PIN_LabA-like 147 278 - -
Gso13g1592 393 MobiDBLite consensus disorder prediction 367 393 - -
Gso13g1592 393 SMART c2h2final6 137 160 IPR013087 -
Gso13g1592 393 SUPERFAMILY beta-beta-alpha zinc fingers 133 162 IPR036236 -
Gso13g1592 393 PANTHER - 43 380 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g1592 Gso-Chr13 31179992 31181609 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso13g1592 53 383 C2H2 Transcription Factor Family AT4G12240 60.843 1.81e-145 416
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gso13g1592 NYN 1.1e-07 CL0280
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g1592 - - gmx:100785257 793.497
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g0031 18 308531 310099 Gso13g1592 13 31179992 31181609 GST