Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g1581 ATGGGAAGGGGAAGAGTGGAGTTGAAGAGGATTGAGAACAAGATCAACAGGCAAGTGACCTTTGCAAAACGAAGGAACGGGCTTTTGAAGAAAGCTTATGAGCTTTCCGTTCTTTGTGATGCCGAGGTTGCTCTCATCATCTTCTCCAATAGAGGAAAGCAGTACGAGTTTTGCAGCGGTTCAAGCATGCTCAAAACGTTGGAGAGGTACCAGAAATGCAACTATGGAGCGCCTGAGGACAATGTGGCAACAAATGAAGCCTTGGAGTTAAGCAGTCAACAAGAATACTTGAGGCTGAAAGCACGTTATGAAGCTCTTCAGCGTTCTCAAAGGAACCTTATGGGAGAAGATCTTGGTCCTCTAAGCAGCAAAGAGCTTGAGTCACTTGAAAGGCAGCTAGATTCGTCTTTGAAACAAATCAGATCAATAAGGACCCAATTCATGCTGGATCAGCTTTCTGATCTACAACGAAAGGAACACTTTCTAGGTGAATCAAACAGAGATCTCATACAAAGGTTGGAAGAGTTTCAAATAAATCCACTTCAACTGAATCCTAGTGCTGAAGAAATGGGGCATGGACGCTATCCAGGTCAACCCCAAGGCCATGCTCTCTTTCAACCATTGGACTGTGAGCCAACCTTACAAATTGGATATCATCCTGATCCAGTATCAGTGGTGTCAGAAGGCCCAAGCATGAATAATTACATGGCAGGATGGTTACCATGA 726 0.4435 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKQYEFCSGSSMLKTLERYQKCNYGAPEDNVATNEALELSSQQEYLRLKARYEALQRSQRNLMGEDLGPLSSKELESLERQLDSSLKQIRSIRTQFMLDQLSDLQRKEHFLGESNRDLIQRLEEFQINPLQLNPSAEEMGHGRYPGQPQGHALFQPLDCEPTLQIGYHPDPVSVVSEGPSMNNYMAGWLP* 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g1581 241 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Gso13g1581 241 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Gso13g1581 241 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Gso13g1581 241 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL9 HOMOLOG 1 228 - -
Gso13g1581 241 SUPERFAMILY SRF-like 2 79 IPR036879 GO:0003677|GO:0046983
Gso13g1581 241 Gene3D - 13 112 IPR036879 GO:0003677|GO:0046983
Gso13g1581 241 ProSiteProfiles K-box domain profile. 89 179 IPR002487 GO:0003700|GO:0005634|GO:0006355
Gso13g1581 241 Coils Coil 126 146 - -
Gso13g1581 241 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Gso13g1581 241 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 228 - -
Gso13g1581 241 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977|GO:0045944
Gso13g1581 241 Pfam K-box region 91 173 IPR002487 GO:0003700|GO:0005634|GO:0006355
Gso13g1581 241 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Gso13g1581 241 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g1581 Gso-Chr13 31098552 31103008 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso13g1581 1 241 MADS-box Gene Family AT1G24260 72.358 2.10e-115 328
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Gso13g1581 K-box 1.4e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g1581 - - gmx:100794429 484.182
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g0042 18 384007 389092 Gso13g1581 13 31098552 31103008 GST
Gso5g1269 5 36216666 36225192 Gso13g1581 13 31098552 31103008 PCT
Gso8g0880 8 8172273 8179773 Gso13g1581 13 31098552 31103008 PCT