Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g1574 ATGGAGTGTAATGCAAAATCTCTCGGGCAATGGGACTGGGAGCACTTATTCTTCTTCAATACAAAAGCAGCTGAAAATCCAAGGTTACAACCAACTGATTGTAGCAGTGAAGCAGATCGGGAAATCAACGTTGGAATGTTGCATCCATCAGGTGGTAGTGCTTGTTCTGGCTCTGAACTAATACATGCTTCTTCATCAAGGAGCTCAAAATCAGCTTCCAACAATTCATCATCAAATGGGGATAGCAAGGCATCTATATTGACTCTGGAAGGTTCTCATGATGATTCCACTGGGAAGAAAGAATTGTGCAATGGAGAGCCAATTGAAACTTCTCCTGCAGCAGTGCCCTCTCCTGTCTCTGGTGAACCGTTGCTCACTCTAAAGCTTGGTAAACGATTGTACTTTGAGGATGTCTGTACCGGAAGTGATTCCAAGAAACCATCTTCCTTTGACGTTCCCATTTCATCAGGAAAGAAACATAAAACCAGTAGTCAGACTTTACAGCATCCAAGCTGCCAGGTGGAAGGCTGTGGCCTTGACCTCTCATCTGCTAAAGATTACCATCGCAAACACCGAGTTTGTGAAGCTCATTCCAAATCCCCTAAGGTGGTTATAACTGGTTTGGAACGCCGATTTTGCCAGCAATGTAGCAGGTTCCATGCTCTGTCAGAGTTTGATGACAAAAAAAGAAGCTGTAGGCGACGTCTTTCAGATCACAATGCAAGGCGCCGCAAACCTCAGCCTGACTCAATCCAATTAAATCCATCAGCTTTGTCTTCATCACCCTATGATGGGAGGCAAATAGTGAGTCCATTTGCATTTTCAAGGACTGCCACAAATTTAGCTTGGCAAGATATGCACCCCCAGACAAAAGAATTTCTCCCGAAGCCTGCAAAAGCCTTCAATAAGATACCGAGTATTGTCTCCATGCTTTCTGATGATTCCAGTGGCCTTCTAACATCTAGAGGCATAGCAACGAAGAGTACTGTTCCAGGTATGGAAGATCCCATTAGGTTGTCTGATCCAAACGGTACACAAGATGTTAACCGTGCTCTCTCTCTTCTGTCAACGAATTCTTCATCTTCATGGGGTGCATATGAGACTAAGTCCCTTTCTTTGGAACACTCCACTCGGGCAACACACTCAATCACTCAGCATCACTTACCACTTCCTTCCTCGGCAGAGTATTGGCACACTGATCATCAACAACATTCAAGCATGTGTATCTCATTCACGGATTGCGATAGCAGCAATCGCTTTCAAGACTTTCAGCTGTTGAGCTCACCCTATGAATCACCTTTTCCTTGCAACCAACTGGATTAA 1323 0.4452 MECNAKSLGQWDWEHLFFFNTKAAENPRLQPTDCSSEADREINVGMLHPSGGSACSGSELIHASSSRSSKSASNNSSSNGDSKASILTLEGSHDDSTGKKELCNGEPIETSPAAVPSPVSGEPLLTLKLGKRLYFEDVCTGSDSKKPSSFDVPISSGKKHKTSSQTLQHPSCQVEGCGLDLSSAKDYHRKHRVCEAHSKSPKVVITGLERRFCQQCSRFHALSEFDDKKRSCRRRLSDHNARRRKPQPDSIQLNPSALSSSPYDGRQIVSPFAFSRTATNLAWQDMHPQTKEFLPKPAKAFNKIPSIVSMLSDDSSGLLTSRGIATKSTVPGMEDPIRLSDPNGTQDVNRALSLLSTNSSSSWGAYETKSLSLEHSTRATHSITQHHLPLPSSAEYWHTDHQQHSSMCISFTDCDSSNRFQDFQLLSSPYESPFPCNQLD* 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g1574 440 MobiDBLite consensus disorder prediction 247 262 - -
Gso13g1574 440 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 2 21 439 - -
Gso13g1574 440 Gene3D - 162 233 IPR036893 GO:0003677|GO:0005634
Gso13g1574 440 MobiDBLite consensus disorder prediction 141 168 - -
Gso13g1574 440 Pfam SBP domain 172 245 IPR004333 GO:0003677
Gso13g1574 440 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 21 439 IPR044817 GO:0003677
Gso13g1574 440 MobiDBLite consensus disorder prediction 57 92 - -
Gso13g1574 440 MobiDBLite consensus disorder prediction 142 168 - -
Gso13g1574 440 MobiDBLite consensus disorder prediction 236 262 - -
Gso13g1574 440 MobiDBLite consensus disorder prediction 47 121 - -
Gso13g1574 440 ProSiteProfiles Zinc finger SBP-type profile. 169 246 IPR004333 GO:0003677
Gso13g1574 440 SUPERFAMILY SBT domain 170 251 IPR036893 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g1574 Gso-Chr13 31044206 31050225 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso13g1574 1 400 SBP-box Gene Family AT5G43270 38.824 2.12e-67 219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Gso13g1574 SBP 6.9e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g1574 - - gmx:100796013 870.152
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g0048 18 433584 439402 Gso13g1574 13 31044206 31050225 GST