Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g1559 ATGGTTATGGCTGACGAAGAAGAAAACGGAGTATCGATCCAACTGGAATTCCCGAAGGGTCGAGTGAAGAAGATTATGGCGCTGGACAAAGACGTGAAGAGAGTGAGCTCAGAAGCGTTGTTCCTGGTGTCGCGCTCCACCGAATTATTCCTCCAATTTCTGGCTGAAAAATCGGCTCAGGTTGCAATTGAGAAGAAACGGAAGACCGTGAATCTCGAACACATAAGAGTGGCGGTGAAGAGGCACCAGCCAACCAGGGATTTTCTCCTCGATGAGCTTCCGCCGCCGTCTCAGGCCGCCAAGCCCGATAAGCCCACTCAGCCTGCGGGTCGGCCCAAATTGGATCCTGCTCCCCGTGGTACTCGCTGCATCGATCAATTCTTCCGGAAACCAGAACCTGAAAACACAGCCCAAGCCCCAGGCCAACCACCTGAAAATCCAGCTCAAGCTCAATCGCCTGAAAATCCAGACCAAGACCAAGCCCAATCACCGGTACCTGTAGATGAGTCTTAG 513 0.5283 MVMADEEENGVSIQLEFPKGRVKKIMALDKDVKRVSSEALFLVSRSTELFLQFLAEKSAQVAIEKKRKTVNLEHIRVAVKRHQPTRDFLLDELPPPSQAAKPDKPTQPAGRPKLDPAPRGTRCIDQFFRKPEPENTAQAPGQPPENPAQAQSPENPDQDQAQSPVPVDES* 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g1559 170 MobiDBLite consensus disorder prediction 151 170 - -
Gso13g1559 170 MobiDBLite consensus disorder prediction 83 170 - -
Gso13g1559 170 SUPERFAMILY Histone-fold 15 82 IPR009072 GO:0046982
Gso13g1559 170 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 5 132 - -
Gso13g1559 170 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 16 79 IPR003958 -
Gso13g1559 170 PANTHER NUCLEAR FACTOR Y, SUBUNIT C13 5 132 - -
Gso13g1559 170 Gene3D Histone, subunit A 2 94 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g1559 Gso-Chr13 30940114 30940845 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso13g1559 6 130 CCAAT-HAP5 Transcription Factor Family AT5G43250 63.200 6.33e-47 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Gso13g1559 CBFD_NFYB_HMF 2.6e-19 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g1559 - - gmx:100790556 341.658
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g0061 18 521661 522436 Gso13g1559 13 30940114 30940845 GST