Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g1556 ATGGTGAAGTACTCCAGAGAACCCGACAATCCCACCAAGTCCTGCAAGGCCAGAGGCGCTGACCTCAGAGTGCATTTCAAGAACACTAGGGAGACTGCCTTTGCCATCAGGAAGTTGCCCCTGGTTAAAGCTAAAAGATACCTGGAGGATGTTTTGGCCCACAAACAGGCCATCCCTTTCCGACGCTTCTGTGGTGGTGTTGGGAGGACAGCCCAGGCTAAGAGCAGACACTCCAATGGTCAAGGACGCTGGCCCGTCAAATCAGCTAAGTTCATCCTAGATTTGCTGAAGAACGCCGAGAGTAATGCTGAGGTAAAAGGTTTGGATGTCGATGCTCTGTACATTTCCCATGTCCAGGTTAATCAAGCACAGAAGCAAAGGCGTCGTACCTACAGAGCTCATGGAAGAATCAACCCTTACATGTCATCTCCATGCCACATTGAGCTGATATTGTCTGAGAAGGAAGAGCCTGTGAAGAAAGAGGCTGAGACCCAATTGGCAACAAGCAAGAAGAAGGGTGCTCTTCGAAGTGGTGCTTCATCTTAA 546 0.4963 MVKYSREPDNPTKSCKARGADLRVHFKNTRETAFAIRKLPLVKAKRYLEDVLAHKQAIPFRRFCGGVGRTAQAKSRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHVQVNQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEAETQLATSKKKGALRSGASS* 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g1556 181 Gene3D Ribosomal protein L22/L17 1 180 IPR036394 GO:0003735|GO:0005840|GO:0006412
Gso13g1556 181 MobiDBLite consensus disorder prediction 160 181 - -
Gso13g1556 181 TIGRFAM uL22_arch_euk: ribosomal protein uL22 4 154 IPR005721 GO:0003735|GO:0006412|GO:0015934
Gso13g1556 181 Hamap 50S ribosomal protein L22 [rplV]. 2 154 IPR005721 GO:0003735|GO:0006412|GO:0015934
Gso13g1556 181 CDD Ribosomal_L22 15 151 IPR001063 GO:0003735|GO:0005840|GO:0006412
Gso13g1556 181 SUPERFAMILY Ribosomal protein L22 1 154 IPR036394 GO:0003735|GO:0005840|GO:0006412
Gso13g1556 181 PANTHER 60S RIBOSOMAL PROTEIN L17 1 181 IPR005721 GO:0003735|GO:0006412|GO:0015934
Gso13g1556 181 Pfam Ribosomal protein L22p/L17e 17 152 IPR001063 GO:0003735|GO:0005840|GO:0006412
Gso13g1556 181 PANTHER 60S RIBOSOMAL PROTEIN L17-2-LIKE 1 181 - -
Gso13g1556 181 ProSitePatterns Ribosomal protein L22 signature. 127 151 IPR018260 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g1556 Gso-Chr13 30923606 30925495 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso13g1556 1 174 Cytoplasmic Ribosomal Protein Gene Family AT1G27400 89.080 1.15e-116 326
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g1556 K02880 - gmx:100800781 362.844
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g0065 18 572387 574309 Gso13g1556 13 30923606 30925495 GST
Gso13g1556 13 30923606 30925495 Gso5g1247 5 35994298 35997251 PCT
Gso13g1556 13 30923606 30925495 Gso8g0863 8 8006534 8009784 PCT
Gso5g1247 5 35994298 35997251 Gso13g1556 13 30923606 30925495 PCT
Gso8g0863 8 8006534 8009784 Gso13g1556 13 30923606 30925495 PCT