Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g1550 ATGGATGTTGTTGAGGCTGAAGAAAGTTTTTTTGCAGCAAGCGATGCCAAGTTACATGGAGAAATGTGCAAGTGTCTTTTTGCAATATATTGCAAGATATTGTCATTATTTCCTTCTTTAGAAGCTGCTAGGCCTAGGAGCAAATCTGGAATTCAGGCATTATGTTCATTGCATGTAGCCTTAGAAAAGGCAAAGAATGTTCTTCAGCACTGCTCAGAGTGTAGTAAACTTTACTTGGCTATAACTGGGGATTCTGTTCTGCTAAAATTTGAGAAGGCTAAATGTGCTCTCGAGGACAGTCTTAAACGGGTGGAAGATATTGTTCCTCAATCTATTGGTTGTCAGATTGAGGAAATTGTGAAAGAACTTGCAAGTACGGTATTTGCACTTGACCCATCAGAGAAGCAAGTTGGGGATGATTTAATTGCATTGCTTCAGCAGGGAAGAAAGTTTAGTGACTCTAATGATAGTAATGAACTTGAATGTTTTCATCTGGCTGCTACTAGACTTGGAATCACTTCTTCAAGAACAGCTCTTACAGAAAGAAGAGCTCTAAAAAAACTCATAGAAAGGGCTCGTGCTGAGGAAGACAAGCGGAAAGAATCAATTATTGCTTTTCTTTTACACCTTATGAGGAAATATTCCAAGTTATTTAGAAGTGAGTTCTCTGATGATAATGATTCTCAGGGTTCTCAACCTTGTTCTCCCACTGTTCAGAGATCTCTTGAGGATGGCATTCCCGGTGGTCATTGTCATGCCTTTGACAGACAGCTTTCAAAACTTAGTTCCTTTAATTTTAAGCCAAATAATAGGAAATCAGGGCAGATGCTCCTTCCGCCAGAAGAGTTAAGGTGCCCAATATCTCTGCAACTTATGAGTGATCCTGTTATAATTGCTTCTGGGCAAACATATGAAAGGATTTGTATAGAGAAATGGTTCAGAGATGGGCACAACACCTGCCCAAAGACTCAACAGAAACTTTCACATCTTTGTTTGACTCCTAATTACTGTGTTAAGGGTCTTGTGGCTAGTTGGTGTGAACAGAATGGAGTTCCTATTCCTGAAGGCCCTCCTGAATCTCTTGATTTTAACTACTGGAGGTTGGCATTATCAGACACTGAATCCACAAATTCAAGATCCGTAAACAGTGTCAGCTCTTGCAAGTTGAAGGGTGTCAAAGTTGTTCCTGTAGAAGAGAGTGGTATCTCAGAGCAAACAGGGGGAAATGCAACTGAAAGTTTTTCTGCACAAGAGGAAGATAATGAACGGTATCTTAGTTTTCTTAAAGTCTTGACAGAAGGAAACAATTGGAAGAGGAAGTGTAGAGTGGTTGAACAGTTGAGGCTGTTGCTGCGGGATGATGAGGAAGCCAGGATTTTTATGGGCACCAATGGATTTGTTGAAGCACTTATGCAGTTTCTGCAATCAGCTGTGCTTGAAGCGAATGTGATGGCTCTTGAAAATGGAGCTATGGCTCTGTTCAACTTGGCTGTGAATAACAATAGAAATAAGGAAATTATGATAGCAACAGGAATCTTGTCGTTGTTGGAGGAAATGATTTCAAAAACTAGTTCCTATGGTTGTGCAGTTGCCCTGTATCTGAATCTTTCTTGCCTCGATGAAGCCAAGCATGTGATTGGCACAAGTCAGGCTGTCCAGTTCCTAATCCAGATTCTTCAAGACAAGACAGAAGTGCAGTGCAAGATAGATTCCCTCCATGCACTCTATAACCTTTCTACTGTGCCCTCCAATATTCCAAACCTCCTTTCATCTGGCATCATTTGTAGCCTACAATCCCTTCTTGTAGGCCAGGGTGATTGCATGTGGACAGAAAAATGCATAGCTGTTTTGATAAATTTGGCGGTTTCTCATGTGGGAAGAGAGAAATTGATGTTGGCTCCTGGACTTATAAGTGCCTTGGCTTCCACTCTAGACACTGGTGAGCCCATAGAGCAGGAGCAAGCTGCTTCTTGTCTCCTAATTTTGTGTAACAGGAGTGAGGAATGTTGTGAGATGGTCCTGCAAGAAGGGGTTATACCTGCATTGGTGTCAATATCGGTGAATGGGACCTCGAGAGGAAGAGAGAAGGCTCAGAAGCTCTTGATGGTCTTCCGAGAGCAGCGACAACAAGACCATTCACCTGTTAAGACTGATCAACGTGAATCCGAAAGTAGTGATTTGTCTATGCCTCCTCCTGAAACCAAACTGCTATCTAAATCAATATCTAGAAGAAAGGTGGGGAAAGCTTTCAGCTTTCTCTGGAAAAGCAAGAGCTATTCTGTTTACCAGTGTTAA 2295 0.4166 MDVVEAEESFFAASDAKLHGEMCKCLFAIYCKILSLFPSLEAARPRSKSGIQALCSLHVALEKAKNVLQHCSECSKLYLAITGDSVLLKFEKAKCALEDSLKRVEDIVPQSIGCQIEEIVKELASTVFALDPSEKQVGDDLIALLQQGRKFSDSNDSNELECFHLAATRLGITSSRTALTERRALKKLIERARAEEDKRKESIIAFLLHLMRKYSKLFRSEFSDDNDSQGSQPCSPTVQRSLEDGIPGGHCHAFDRQLSKLSSFNFKPNNRKSGQMLLPPEELRCPISLQLMSDPVIIASGQTYERICIEKWFRDGHNTCPKTQQKLSHLCLTPNYCVKGLVASWCEQNGVPIPEGPPESLDFNYWRLALSDTESTNSRSVNSVSSCKLKGVKVVPVEESGISEQTGGNATESFSAQEEDNERYLSFLKVLTEGNNWKRKCRVVEQLRLLLRDDEEARIFMGTNGFVEALMQFLQSAVLEANVMALENGAMALFNLAVNNNRNKEIMIATGILSLLEEMISKTSSYGCAVALYLNLSCLDEAKHVIGTSQAVQFLIQILQDKTEVQCKIDSLHALYNLSTVPSNIPNLLSSGIICSLQSLLVGQGDCMWTEKCIAVLINLAVSHVGREKLMLAPGLISALASTLDTGEPIEQEQAASCLLILCNRSEECCEMVLQEGVIPALVSISVNGTSRGREKAQKLLMVFREQRQQDHSPVKTDQRESESSDLSMPPPETKLLSKSISRRKVGKAFSFLWKSKSYSVYQC* 765
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g1550 764 PANTHER U BOX DOMAIN-CONTAINING 1 754 - -
Gso13g1550 764 Pfam U-box domain 280 349 IPR003613 GO:0004842|GO:0016567
Gso13g1550 764 MobiDBLite consensus disorder prediction 707 723 - -
Gso13g1550 764 SUPERFAMILY RING/U-box 276 354 - -
Gso13g1550 764 SUPERFAMILY ARM repeat 427 707 IPR016024 -
Gso13g1550 764 SMART arm_5 454 498 IPR000225 GO:0005515
Gso13g1550 764 SMART arm_5 539 580 IPR000225 GO:0005515
Gso13g1550 764 SMART arm_5 624 664 IPR000225 GO:0005515
Gso13g1550 764 CDD RING-Ubox_PUB 283 325 IPR045210 -
Gso13g1550 764 Coils Coil 175 195 - -
Gso13g1550 764 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 1 754 - -
Gso13g1550 764 Gene3D - 625 703 IPR011989 -
Gso13g1550 764 Gene3D - 421 624 IPR011989 -
Gso13g1550 764 ProSiteProfiles U-box domain profile. 278 352 IPR003613 GO:0004842|GO:0016567
Gso13g1550 764 SMART Ubox_2 282 345 IPR003613 GO:0004842|GO:0016567
Gso13g1550 764 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 465 511 IPR000225 GO:0005515
Gso13g1550 764 MobiDBLite consensus disorder prediction 707 736 - -
Gso13g1550 764 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 279 352 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g1550 Gso-Chr13 30881961 30887325 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso13g1550 1 763 U-box Gene Family AT1G67530 66.498 0.0 1020
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g1550 - - gmx:100804344 1470.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g0071 18 609706 615010 Gso13g1550 13 30881961 30887325 GST
Gso13g1550 13 30881961 30887325 Gso5g1242 5 35929633 35934594 PCT
Gso13g1550 13 30881961 30887325 Gso8g0858 8 7954481 7959513 PCT
Gso5g1242 5 35929633 35934594 Gso13g1550 13 30881961 30887325 PCT
Gso8g0858 8 7954481 7959513 Gso13g1550 13 30881961 30887325 PCT