Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g1549 ATGCCACAGCCAGAAAAATCGCTCGGTATTCCAGGAGACGGTAGATGTTTGTTTAGATCTGTGGTTTATGGTGCATGTCTAAGATCAGGGGAACCATCTCCAAGTCTTAGCAGGCAAAAAGAACTCGCAGATGAACTCAGAGCCAAGGTTGTGGATGAATTCATCAAGAGGAGGGTAGACACTGAGTGGTTTCTAGAAGGTGACTTTGATACCTATACAGTACAGATGCGAAAGCCTCACATATGGGGAGGAGAACCTGAACTTCTCATGTCCTCACATGTCTTACAGATGCCTATAACGGTGCTCATGCAGGATAAGAGTTCGAGTAACCTTAAAGTTATTGCAGAATACGGTCAGGAGTATGGGAAGGATAACCCTATTCGAGTGATCTATCATGGTTATGGCCACTACGATGCATTATTGAAGAGTTCCTTCCACTAG 441 0.4444 MPQPEKSLGIPGDGRCLFRSVVYGACLRSGEPSPSLSRQKELADELRAKVVDEFIKRRVDTEWFLEGDFDTYTVQMRKPHIWGGEPELLMSSHVLQMPITVLMQDKSSSNLKVIAEYGQEYGKDNPIRVIYHGYGHYDALLKSSFH* 147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g1549 146 Pfam OTU-like cysteine protease 11 137 IPR003323 -
Gso13g1549 146 Gene3D - 5 145 - -
Gso13g1549 146 PANTHER OTU DOMAIN CONTAINING PROTEIN 8 141 - -
Gso13g1549 146 ProSiteProfiles OTU domain profile. 5 143 IPR003323 -
Gso13g1549 146 SUPERFAMILY Cysteine proteinases 9 142 IPR038765 -
Gso13g1549 146 PANTHER OS09G0487700 PROTEIN 8 141 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g1549 Gso-Chr13 30878162 30880237 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso13g1549 10 146 C2H2 Transcription Factor Family AT1G50670 28.261 3.70e-06 43.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g1549 K18342 - gmx:100792132 296.589
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g0072 18 616558 618331 Gso13g1549 13 30878162 30880237 GST