Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g1546 ATGGCGGCTAGTAGACATGGAGGTTATCGTGACAACGAGTTTAGGGACCGTGAGTCCAATTTTGATGTTTCAAGGCGGGGTTTCAATAATAATTCTAAACAAGAGTATGATAAGATTACGAATGGTGGCCGCGATGTTGTGAGGGTTGGGAGCAAGGATGCAAGAGATAGGCTTAGTCTGAAACAAAAAGATATTAGGGACAGGGAAGCTCCAAATGGTAGTTACCGGTCATCTTCGAGTAAGAGCGACTCTGGCAGTAGTGGCGGGTGTAGTAGTGGGCTTGGTCCCAGAAGATGTGAGTTTTCTGTTAAGACTATGGATAGAGAGCCTGGTGAGCTTTCTAGTGAAAGTGGGTCTGATGATGATGGTATTGAATCAGGATCACAGGAAAAATACTGTGAGGTTGCAACAGGTGAAGGAAACCGTGCACGATCTCCACTAGAGAGGAAAAGAAAATTTTCTCCAATAGTATGGAATCAGGATGACAGCGAAGTCAATAATTTATCAAAACTTAGGGTTGTCACAGCAGTGACTACTCTGCCTCCACTTCCAATAGTCCGTCTGTCACCTAATGTTCCCGATAGAGGAGTTGAAACTCATCCTGTCAAAAACACAGAAGCTGAGATTCTTGAGTTACCAACTGTAACTAACCCTCCTTTGCTGTCTGAGTCTCCTGTAGGTTTGCATTCATTGTTGCCAGAGCAGAGATGGGGTAATGAGCAGGAAGCCAAGCAACCTGAAGGTGAAGATTTTATTCCAACTCATAATATATCATCTTCAAGATGGGCATCTGGTGATAACTCTCCTGGTGATGAAGGTGAAATCAATGATGACAAGGAAATCCTTAAGAGGAGGAAGCTATCTCCTGAGCTGGGTATGAGAGTAAGAAACAAGATGTTGAGACTAGAGGAATCTAACATAGAAGATTTTGTAGAAGCTAGAGCCAAATCATCTGAATCTGAAGAAAGAAGTAGCCGTGGGAGATCATCCAGTGGAGATTATCATCCTGGTAATTTGTCAGGGAAGGATGATTATATGGAGATTGATGGTCAAGGTAGCAGAAGTGAAACTAGTGGTTATCATTCGGATACAGATTTGGAAGATGATTGCAGAGAAACTTCTGAACCTCCGGTTCCACCACAAAGAGTTGTCAACATGCTTCAGGGTTGTAGAAGTGTTGATGAGTTTGAGAGACTGAACAAGATAGATGAAGGAACATATGGTGTTGTATTTAGGGCAAAAGATAAGAAGACTGGTGAAATTGTGGCATTGAAAAAGGTGAAGATGGAGAAGGAAAAAGAAGGTTTTCCATTGACTTCTCTCAGGGAAATAAACATTCTTCTTTCCTTTCACCACCCATCCATAGTTGATGTTAAAGAAGTTGTGGTAGGGAGTAACCTTGATAGTATTTTCATGGTTATGGAATACATGGAACATGATCTTAAAGGACTAATGGAGGGAATGAAGCAGCCCTTTAGCCAGAGTGAAGTAAAATGCTTAATGCTCCAGCTTTTAGAAGGTGTGAAGTATCTTCATGACAACTGGGTGCTTCATAGGGATTTGAAGACTTCTAACCTGCTTCTGAATAATAGGGGCGAGTTAAAAATTTGTGATTTTGGATTGGCTCGTCAGTATGGGAGCCCATTGAAACCATATACCCACCTTGTGGTTACTCTTTGGTACAGGGCTCCTGAACTTCTTCTGGGGACAAAACAATATTCAACAGCCATTGACATGTGGTCTCTGGGTTGTATAATGGCTGAGCTATTGTCCAAGGAACCTCTATTTAATGGGAAGACTGAATTTGAACAACTTGACAAGATTTTCAGAATTCTTGGCACACCAAATGAAACAATTTGGCCTGGGTTCTCAGAATTACCCCAAGTCAAGGTCAATTTTGTCAAGAATAAGTGTAATCTCCTGCGTAAAAAATTTCCTGCAACATCATTCACTGGATCACCAGTTCTTTCTGATTCTGGATTTGATTTGTTGAACAAGCTTCTAACTTATGACCCTGAAAAGCGGATCACAGCTGAAGAAGCTCTAAACCATGAGTGGTTTCGTGAAGTTCCCCTTCCGAAGTCTAAAGAATTTATGCCTACATTCCCTGCTCAACATGCTCAAGACAGGCGAATGAGGAGAATATTAAAGAGTCCAGATCCATTAGCTGAGCAGCATTGGAAGGAGATGCAGCAGGGTGAATCAGGGACTGGTGGTATTTTTGGTTAA 2229 0.4186 MAASRHGGYRDNEFRDRESNFDVSRRGFNNNSKQEYDKITNGGRDVVRVGSKDARDRLSLKQKDIRDREAPNGSYRSSSSKSDSGSSGGCSSGLGPRRCEFSVKTMDREPGELSSESGSDDDGIESGSQEKYCEVATGEGNRARSPLERKRKFSPIVWNQDDSEVNNLSKLRVVTAVTTLPPLPIVRLSPNVPDRGVETHPVKNTEAEILELPTVTNPPLLSESPVGLHSLLPEQRWGNEQEAKQPEGEDFIPTHNISSSRWASGDNSPGDEGEINDDKEILKRRKLSPELGMRVRNKMLRLEESNIEDFVEARAKSSESEERSSRGRSSSGDYHPGNLSGKDDYMEIDGQGSRSETSGYHSDTDLEDDCRETSEPPVPPQRVVNMLQGCRSVDEFERLNKIDEGTYGVVFRAKDKKTGEIVALKKVKMEKEKEGFPLTSLREINILLSFHHPSIVDVKEVVVGSNLDSIFMVMEYMEHDLKGLMEGMKQPFSQSEVKCLMLQLLEGVKYLHDNWVLHRDLKTSNLLLNNRGELKICDFGLARQYGSPLKPYTHLVVTLWYRAPELLLGTKQYSTAIDMWSLGCIMAELLSKEPLFNGKTEFEQLDKIFRILGTPNETIWPGFSELPQVKVNFVKNKCNLLRKKFPATSFTGSPVLSDSGFDLLNKLLTYDPEKRITAEEALNHEWFREVPLPKSKEFMPTFPAQHAQDRRMRRILKSPDPLAEQHWKEMQQGESGTGGIFG* 743
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g1546 742 Gene3D Phosphorylase Kinase; domain 1 381 478 - -
Gso13g1546 742 CDD STKc_CDC2L1 390 687 IPR045267 GO:0004674|GO:0005524|GO:0006468
Gso13g1546 742 MobiDBLite consensus disorder prediction 38 71 - -
Gso13g1546 742 ProSiteProfiles Protein kinase domain profile. 396 687 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso13g1546 742 ProSitePatterns Serine/Threonine protein kinases active-site signature. 516 528 IPR008271 GO:0004672|GO:0006468
Gso13g1546 742 MobiDBLite consensus disorder prediction 101 115 - -
Gso13g1546 742 MobiDBLite consensus disorder prediction 1 131 - -
Gso13g1546 742 MobiDBLite consensus disorder prediction 312 329 - -
Gso13g1546 742 MobiDBLite consensus disorder prediction 72 91 - -
Gso13g1546 742 PANTHER CELL DIVISION PROTEIN KINASE 120 742 - -
Gso13g1546 742 SUPERFAMILY Protein kinase-like (PK-like) 388 693 IPR011009 -
Gso13g1546 742 Pfam Protein kinase domain 396 687 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso13g1546 742 SMART serkin_6 396 687 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso13g1546 742 Gene3D Transferase(Phosphotransferase) domain 1 479 721 - -
Gso13g1546 742 MobiDBLite consensus disorder prediction 238 281 - -
Gso13g1546 742 MobiDBLite consensus disorder prediction 360 375 - -
Gso13g1546 742 MobiDBLite consensus disorder prediction 8 23 - -
Gso13g1546 742 MobiDBLite consensus disorder prediction 252 266 - -
Gso13g1546 742 MobiDBLite consensus disorder prediction 312 382 - -
Gso13g1546 742 PANTHER - 120 742 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g1546 Gso-Chr13 30852802 30856713 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso13g1546 387 714 Core Cell Cycle Gene Families AT5G10270 45.115 5.51e-94 300
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-PITSLRE Gso13g1546 Pkinase 1.2e-75 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g1546 K08818 - gmx:100793729 1427.54