Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g1540 ATGGAAGAGGAAATCAAGTCCGAATTCAAAAGAAGCGGTTTCGGCCTCGAAGACGAACAAGAGATTCTAAGCAAATGTGTCACTTTCTGCATCAACTACAGTCTCACTCCTTCTGATCTCGTTTCAAGCTGGGAAGTTTATTACCTCAATAGACAGCTGAACGAACCAGTAGTACAAAATGCTGAAATTGATGGCTTTCTGTTGCATCTACAAAATGAGAAGAAAGAGGATGTTATAAAGGAGAAGGAGGAAGCTGGCTTGCATATTTACTCTATCGGAGACGTAGAAATGATCTTAAATAATGATGATGATACAAAGGACAATACTCCCGGAACTCCAATAAATCATCATCAAGATCCTTTATCTCCTGCACCTGATACACCATCTTTAATGTATGAGAATGTTTTATCTTCTGGAAAACCATCAAAATCAAAACTAGTAACACCCTTTTCAAAAAGAACAGATAAGTTTGCAGTGAAATTTAGCATCAACACTGTCCCTAATGTAGAGAATGATGAAAATGAAGATGATGTTGTTAGAAGAGTTCCACTCTTTGAAAGGAGTTCATTGTCCATTCACGGATCAGGACCCAAACCAGGTTGCAGATTCTTGTATGATAGAACAGAGGATAGGCTTAATGCAATAGAAAACCGACTTAGGAAACATACAAGGGCATTTGTAGCTTCTGGGCTCCATGAAGAACCAACAGACCCTACAACTGCTTCACAGAGAAGCATTTTTGCTGTTGGCATGATTTGTTGTGATGGAGAAGGCCGTTTAAATGAGAAGTCTGTCATGCTGCAGAGCAGTATTGAGCATTCTGGAGGAGAATGTGTTCGCCTAGACTTGCAACGGTTAAGCCATTATTCAATTTTTCCTGGCCAGATAGTTGGTATTGGAGGGCATAATCCCAGTGGGCATTGCTTCGTTGCAACTAAATTGGTGGATTCTATACCTACCTCCGTTGCTGATGAGGATTCAAATCCTGCAAAGAAGCAAGCTGTTGATAAGGAGAATCAGCCAACTGATCTGCTTTGTAAACAAAGAAAGTTATCAATGATTATTGCTGCTGGCCCCTTTACTACAACAGACAATTTGTTGTTTGAGCCTCTTATAGAACTGCTGAAACATGCAAAACTAAGACCACCACAGTTGCTTGTATTGCTGGGACCATTTGTTGACTCTGAGCACCCAGACATTAAGAAAGGAACTGTAGACACTAGTTTTGATGAAATATTTGAGGAAATCCTGAAGAAGTTGGAAGAATATGTAGATTCAGCTACACGTGTCCTTCTTGTTCCATCTATACGTGATGCTAACCATGATTTTGTTTTTCCTCAACCTGCATTCGACATCAAATCTCAGATAGTCAGTCTCAGTAATCCCGGAATCTTTGAGGCAAATAAGGTTAAGGTTGGCTGCTGCACCGTGGATATTCTCAAGCAAATCAGTGGGGAGGAGATATCACGAACTGCTGCAGATGGAAAACCCATTGATCGCTTGAGTAGACTTGCAAACCATATTCTTAACCAACAAAGCTTCTATCCACTTTACACACCAGCAGAAAGTGTTCCCTTGGACTTTTCGCTTGCTCCAGAAGCCCTTCAACTCTCGTTTGTTCCAGACATACTTATCCTACCTTCCGACATCAAGTACTTTGTCAAGGTGCTTAGTAGCGAAAATGAAGGGATAAACCACACGAAATGCATAGCTATCAATCCGGGAAGACTAGCTAAGGGAGAAGGAGGGGGAACTTTTGTTGAGCTTGATTACTGTGGGGCTTCCGACCAAATTAACGCTTCAATTGTTGGCATATGA 1818 0.4103 MEEEIKSEFKRSGFGLEDEQEILSKCVTFCINYSLTPSDLVSSWEVYYLNRQLNEPVVQNAEIDGFLLHLQNEKKEDVIKEKEEAGLHIYSIGDVEMILNNDDDTKDNTPGTPINHHQDPLSPAPDTPSLMYENVLSSGKPSKSKLVTPFSKRTDKFAVKFSINTVPNVENDENEDDVVRRVPLFERSSLSIHGSGPKPGCRFLYDRTEDRLNAIENRLRKHTRAFVASGLHEEPTDPTTASQRSIFAVGMICCDGEGRLNEKSVMLQSSIEHSGGECVRLDLQRLSHYSIFPGQIVGIGGHNPSGHCFVATKLVDSIPTSVADEDSNPAKKQAVDKENQPTDLLCKQRKLSMIIAAGPFTTTDNLLFEPLIELLKHAKLRPPQLLVLLGPFVDSEHPDIKKGTVDTSFDEIFEEILKKLEEYVDSATRVLLVPSIRDANHDFVFPQPAFDIKSQIVSLSNPGIFEANKVKVGCCTVDILKQISGEEISRTAADGKPIDRLSRLANHILNQQSFYPLYTPAESVPLDFSLAPEALQLSFVPDILILPSDIKYFVKVLSSENEGINHTKCIAINPGRLAKGEGGGTFVELDYCGASDQINASIVGI* 606
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g1540 605 Gene3D - 332 490 - -
Gso13g1540 605 Gene3D - 496 600 - -
Gso13g1540 605 Pfam DNA polymerase alpha/epsilon subunit B 354 555 IPR007185 GO:0003677|GO:0006260
Gso13g1540 605 Gene3D - 1 66 IPR043034 -
Gso13g1540 605 Coils Coil 205 225 - -
Gso13g1540 605 PANTHER DNA POLYMERASE 2 ALPHA 70 KDA SUBUNIT 1 604 IPR016722 -
Gso13g1540 605 MobiDBLite consensus disorder prediction 100 129 - -
Gso13g1540 605 PIRSF DNA_pol_alpha_2 1 594 IPR016722 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g1540 Gso-Chr13 30805470 30811236 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso13g1540 2 605 Core DNA Replication Machinery Family AT1G67630 58.748 0.0 712
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g1540 K02321 - gmx:100795306 1179.47
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g0081 18 681110 692181 Gso13g1540 13 30805470 30811236 GST