Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g1534 ATGTATTTATCGGAGAAGCCTCGTCCCATCGATTTCTACAAGGAGGAAGGCGCGCGCGACATGATGATCGAGGTCGTCTCCAACGGCGACCTCCCTCCTCCTCCGCCGCCGCCGCCGATGATTCTCGGCGAGAGCAGCGGCGAGGACCCCGAGGTCGAGATCAAGGCCCCGAAGAAGCGCGCCGAGACCTGGGTCCAGGACGAGACGCGCTCTCTCATTGGCCTTCGCCGCGAGATGGACGCGCTCTTCAACACCTCCAAGTCCAACAAGCACCTGTGGGAGCAGATATCGGCGAAGATGAGGGAGAAAGGTTTCGATCGTTCTCCAACCATGTGCACCGATAAGTGGCGCAACCTCTTGAAGGAGTTCAAGAAGGCCAAGCACCAGGACCGAGGGAGTGGTTCCGCCAAGATGTCGTATTACAAGGAGATTGACGAGATCCTCAGAGAGAGGAGCAAGAATGTGCAGTATAAAAGCCCTACTCCTCCGCCCAAGGTTGATTCCTTTATGCAGTTTGCTGATAAAGGTATTGACGATACCAGTATCTCTTTTGGGCCTGTCGAAGCTACTGGAAGACCAACACTGAATCTTGAGAGAAGTTTGGATCATGATGGACATCCTCTTGCCATTACCACAGCTGATGCTGTTGCAGCAAGTGGAGTCCCTCCTTGGAATTGGAGAGAGACTCCTGGAAACGGTGGAGAAAGTCAGTCATGTTGTGGAAGGGTTATATCAGTTAAATGGGGTGATTATACAAGGCGAATAGGTATTGATGGCACCCCAGAAGCCATTAAAGAAGCAATTAGGGCTGCTTTTAGGTTGAGAACTAAACGTACATTTTGGTTGGAGGATGAAGATCAGATTATCAGAAGTATTGACCGTGAAATGCCTTTAGGAAATTACACTCTTCACATTGATGAAGGAATGGCCATTAAATTACCTCTCTATGATGAGCCTGACCATATACCTGTGCATACTGAAGATAAGATATTTTACACTGAAGACGATTTCCGTGATTTTCTGACCCGCCGGGGTTGGATATGTCTAAGAGAATTTGACAGCTACAGAAATATTGACAACATGGATGATCTTCGACCTGGTGCCATATATCGTGGTGTGAGTTGA 1125 0.4916 MYLSEKPRPIDFYKEEGARDMMIEVVSNGDLPPPPPPPPMILGESSGEDPEVEIKAPKKRAETWVQDETRSLIGLRREMDALFNTSKSNKHLWEQISAKMREKGFDRSPTMCTDKWRNLLKEFKKAKHQDRGSGSAKMSYYKEIDEILRERSKNVQYKSPTPPPKVDSFMQFADKGIDDTSISFGPVEATGRPTLNLERSLDHDGHPLAITTADAVAASGVPPWNWRETPGNGGESQSCCGRVISVKWGDYTRRIGIDGTPEAIKEAIRAAFRLRTKRTFWLEDEDQIIRSIDREMPLGNYTLHIDEGMAIKLPLYDEPDHIPVHTEDKIFYTEDDFRDFLTRRGWICLREFDSYRNIDNMDDLRPGAIYRGVS* 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g1534 374 CDD GT1 62 127 - -
Gso13g1534 374 PANTHER TRIHELIX TRANSCRIPTION FACTOR GT-4 5 373 - -
Gso13g1534 374 PANTHER - 5 373 - -
Gso13g1534 374 MobiDBLite consensus disorder prediction 29 43 - -
Gso13g1534 374 Gene3D - 64 126 - -
Gso13g1534 374 MobiDBLite consensus disorder prediction 26 60 - -
Gso13g1534 374 SMART sant 60 122 IPR001005 -
Gso13g1534 374 ProSiteProfiles Myb-like domain profile. 56 120 IPR001005 -
Gso13g1534 374 Pfam Myb/SANT-like DNA-binding domain 63 147 IPR044822 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g1534 Gso-Chr13 30768636 30774681 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso13g1534 20 373 Trihelix Transcription Factor Family AT3G25990 70.604 0.0 506
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Gso13g1534 Myb_DNA-bind_4 3.5e-21 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g1534 - - gmx:100809497 764.992
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g0087 18 729709 734949 Gso13g1534 13 30768636 30774681 GST