Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g1527 ATGGATAATGGTTGTTTCTCTTCCCCAAGACGTGATTTTCCTGCTGGTCTGAGAGTTCTAGTTGTGGATGATGATCCAACGTGGCTCAAGATCCTTGAGAAGATGCTCAAAAAGTGCAATTATGAAGTGACTACATGTTGTTTAGCAAGGCATGCTCTAAGCTTGCTTCGTGAAAGGAAGGATGGATATGATATAGTGATCAGCGATGTAAACATGCCCGACATGGATGGTTTTAAACTTCTTGAGCATGTTGGGCTTGAGATGGATCTTCCTGTCATTATGATGTCTGTGGATGGGGAAACAAGCAGGGTGATGAAAGGTGTTCAACATGGAGCCTGTGATTATCTCCTTAAGCCTATAAGGATGAAAGAACTGAGAAACATATGGCAGCATGTCTTAAGAAAAAGGATACATGAGGCCAAAGAATTTGAAAGTTTTGAGAGTTTTGAGAGCATTCACTTGATGAGAAATGGATCAGAGCTATCAGATGATGGGAACCTGTTTGCGGTAGAAGATGTTACCTCAACAAAGAAAAGAAAAGATGCAGATAACAAACACGATGACAAAGAATGTTTGGATCCATCATCCACCAAGAAAGCTAGAGTAGTCTGGTCTGTGGATCTTCATCAGAAGTTTGTTAAAGCGGTGAATCAGATTGGATTTGATAACATCTTATATCTTTCACGCACACAAAAAATTGTAACAAATCATATTTGTTTGGCAGAAGTGGGGCCGAAGAAAATACTAGATCTGATGAATGTCCCATGGCTGACTAGAGAGAACGTTGCTAGCCACTTGCAGAAATACAGGCTTTATTTGAGTAGGATTCAGAAAGAAAACGATCAGAGATCTTCCTCAAGTGGATTGAAGCATTCAGATTTTCCTTTAAAAGATATGAGAAGTTTTGGTTTTCAGAACTCAGTAAACAACCAGCAACAAAACGATGTTGCCATTGACAGCTACAATCATTCGGATGGATCATTACAACTTCAGAATGTGGAAACTAAAAGTCACGAAGCGGATCCCAAGGGAATTGTTTCACAGTCCACCATAGCGAAAAAAGGAAGGATTTTGACTGGTAACATTGCTGACACAAATATGAGAGAGAGTTTAAGGGTTGGCCTTAATCAAACTTTTGCCCCTCTGGAGTCAGAAGAAAACCATGCAGTATTTGATTGTTCCATGCCAACACCATACACTTGGACTGAAGTTCCACACATGCAACTCAAAGAAGAACACAAGTCAATTGTTCATTTAGAAGATAGCTTCAATCAGTTGCCATTACATGGTAAGCAGCAGCAACACATCCAAGTGGATCAATCACAATCAGTTGCTTCAATTAGTTCCGCTCCCTTGATAACGGAGGAAGAGGTTGCTGCTTGTAAAGAGCCAAAACCTTTGTTTGCAGATTACAAGAATGATTATGCCAATTCTGTGAGTTCAATAGGGAATGCAGTTGGCACCTTTCCTATTCAACCAGGAAGTCTTATTATGAATGGTCAATCTTCAGAACCCATTTCCACCACAAATTCTGGATTGAAAACACAGGGATATAATAATCTCAGTAGCATTTCTGATCTGGAAATTTACCAAAGCAACCTTCTTTTGGGAGGTGAGGTAGCTTCTGCACCATCATTGGATGAGGACTTGCATTTCTATTGGCTACAAGGTGAATGCTATAATAATATGAACTTCAGTCTGCAGAATATAGGAATGTCTGAATATTATGATCCAGGACTTATTTCAGAAGCTCCAACACACTTATATGATTCAGCTGATTACTCAGTTATAGATCAAGGTCTATTCATAGCATGA 1815 0.3956 MDNGCFSSPRRDFPAGLRVLVVDDDPTWLKILEKMLKKCNYEVTTCCLARHALSLLRERKDGYDIVISDVNMPDMDGFKLLEHVGLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVLRKRIHEAKEFESFESFESIHLMRNGSELSDDGNLFAVEDVTSTKKRKDADNKHDDKECLDPSSTKKARVVWSVDLHQKFVKAVNQIGFDNILYLSRTQKIVTNHICLAEVGPKKILDLMNVPWLTRENVASHLQKYRLYLSRIQKENDQRSSSSGLKHSDFPLKDMRSFGFQNSVNNQQQNDVAIDSYNHSDGSLQLQNVETKSHEADPKGIVSQSTIAKKGRILTGNIADTNMRESLRVGLNQTFAPLESEENHAVFDCSMPTPYTWTEVPHMQLKEEHKSIVHLEDSFNQLPLHGKQQQHIQVDQSQSVASISSAPLITEEEVAACKEPKPLFADYKNDYANSVSSIGNAVGTFPIQPGSLIMNGQSSEPISTTNSGLKTQGYNNLSSISDLEIYQSNLLLGGEVASAPSLDEDLHFYWLQGECYNNMNFSLQNIGMSEYYDPGLISEAPTHLYDSADYSVIDQGLFIA* 605
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g1527 604 CDD REC_typeB_ARR-like 19 133 - -
Gso13g1527 604 SUPERFAMILY Homeodomain-like 197 275 IPR009057 -
Gso13g1527 604 SMART REC_2 17 129 IPR001789 GO:0000160
Gso13g1527 604 Gene3D - 17 186 - -
Gso13g1527 604 Gene3D - 195 277 - -
Gso13g1527 604 Pfam Response regulator receiver domain 19 128 IPR001789 GO:0000160
Gso13g1527 604 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 242 271 IPR006447 GO:0003677
Gso13g1527 604 ProSiteProfiles Response regulatory domain profile. 18 133 IPR001789 GO:0000160
Gso13g1527 604 SUPERFAMILY CheY-like 16 147 IPR011006 -
Gso13g1527 604 PANTHER TWO-COMPONENT RESPONSE REGULATOR 14 578 IPR045279 GO:0009736
Gso13g1527 604 PANTHER TWO-COMPONENT RESPONSE REGULATOR 14 578 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g1527 Gso-Chr13 30716949 30721352 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso13g1527 13 284 Response Regulator Gene Family AT2G25180 52.364 4.56e-78 257
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Gso13g1527 Response_reg 2.5e-24 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g1527 - K14491 gmx:100797421 1144.41
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g0094 18 776405 780892 Gso13g1527 13 30716949 30721352 GST
Gso13g1527 13 30716949 30721352 Gso5g1225 5 35759734 35764567 PCT
Gso13g1527 13 30716949 30721352 Gso8g0840 8 7799624 7803998 PCT
Gso5g1225 5 35759734 35764567 Gso13g1527 13 30716949 30721352 PCT
Gso8g0840 8 7799624 7803998 Gso13g1527 13 30716949 30721352 PCT