Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g1525 ATGGCAATGATTCCGTACCACCTTTGCCGTTTACCTTACCAGGATTCCCTCAAAGCACTTGAAGCTGATATACAGCACGCCAATGCTTTGGCTGCTGCAATTCCCAGAGCCAAGGGTGGAACTCTTCTTCAAATGAAATTGGTTTACAATCACTTGGCTCCTCTCTTCCTGTTATTTCTACAATGGATGGATTGTTCTTGTGCAGGCTTTCTCCATAGGTATCTCAACCTCTTCCACATACTTGTATACAAGGTACATAATGATGGTAGATCAATCATGTCTACTCATGGAAGGAAGGCTACCATTGGTGACTTTTATGCCGTTATATTGCCATCTCTCCAACGGCTTCATGGTAGTTTGGAGAAGTTGGAGGTTGTTGAAGAAGAAGAAGGACAGTCAAGCATAGAAGGTCCAAGTTATGGCAAGAAGGTCATTGAAGGTGTGAAACTAACCACCAATGTTGATTTGCAAAGAGAAGATGAATGTGGTATTTGCTTAGAGCCTTGCACCAAAATGGTTTTACCTGGTTGCTGCCATGCCATGTGTATTAAATGCTACCGCAAGTGGAACAGAAAGTCAGAGTCTTGTCCTTTTTGCCGTGGTAGCTTGAGGAGAGTTAATTCGGAGGATCTATGGGTATTAACTTGTAATGATGATGTTGTTGATGCTGAAACAGTTTCTAAGGAGGATTTGTTGCGGTTTTACCTCTATATCAGCAAGCTTCCTAAAGATCACCCAGATGCACTTTTCCTAATGTATTATGAATACCTCATTTAA 777 0.417 MAMIPYHLCRLPYQDSLKALEADIQHANALAAAIPRAKGGTLLQMKLVYNHLAPLFLLFLQWMDCSCAGFLHRYLNLFHILVYKVHNDGRSIMSTHGRKATIGDFYAVILPSLQRLHGSLEKLEVVEEEEGQSSIEGPSYGKKVIEGVKLTTNVDLQREDECGICLEPCTKMVLPGCCHAMCIKCYRKWNRKSESCPFCRGSLRRVNSEDLWVLTCNDDVVDAETVSKEDLLRFYLYISKLPKDHPDALFLMYYEYLI* 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g1525 258 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 6 258 - -
Gso13g1525 258 ProSiteProfiles Zinc finger RING-type profile. 162 200 IPR001841 -
Gso13g1525 258 PANTHER RING FINGER PROTEIN 41, 151 6 258 - -
Gso13g1525 258 Pfam Ring finger domain 160 200 IPR001841 -
Gso13g1525 258 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 146 211 IPR013083 -
Gso13g1525 258 SUPERFAMILY RING/U-box 151 204 - -
Gso13g1525 258 ProSitePatterns Zinc finger RING-type signature. 177 186 IPR017907 -
Gso13g1525 258 SMART ring_2 162 199 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g1525 Gso-Chr13 30686407 30688586 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g1525 - - gmx:100812518 519.62
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g0097 18 803906 806038 Gso13g1525 13 30686407 30688586 GST
Gso13g1525 13 30686407 30688586 Gso5g1223 5 35738292 35740671 PCT
Gso13g1525 13 30686407 30688586 Gso8g0838 8 7779699 7782292 PCT
Gso5g1223 5 35738292 35740671 Gso13g1525 13 30686407 30688586 PCT
Gso8g0838 8 7779699 7782292 Gso13g1525 13 30686407 30688586 PCT