Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g1521 ATGGAATGCTGCATAATCTCCAGGCTCAAGACCCAACCCATATGGTTCGCGCTTCTCTTTATTGTGGGATTGTTAACGATTCTCAAATTGGCATTCGTTGTTCTCAGATGGGTCTACGTCAATTTCCTCAGACCACCGAAGAATCTCAAAAAGTACGGATCTTGGGCCGTGGTTACTGGACCCACCGACGGCATTGGAAAGAGCTTCGCCTTCGAGCTCGCTCGCAAGGGCTTGAACCTCGTCCTTGTCGGAAGAAACCCCGACAAGCTCAAAGACGTGTCGGATTCCATCGCGGCGAGGTTCGGAAAAACCGAGGTTAAGACCGTCGTGGTTGATTTCTTCGGGGATCTGGACGAGGGCGTCAAGAAGATCAGCGAAGCGATTCAAGGGTTGGAAGTTGGAGTGCTCGTTAACAATGTGGGTGTTTCGTACCCTTACGCGAGATTCTTCCATGAAGTGGACGAGGGGCTTCTTAACAACCTTATTAAGCTTAACGTTGTTGGAACTACTAAGGTAACGCAAGCTGTTCTTCCCGGGATGCTGAAGAGAAAGAAGGGTGCGATTGTTAACATGGGTTCTGGAGCTGCTATTGTTATTCCTTCGGATCCTCTTTATGCTGTTTATGCTGCCACCAAAGCGTACATCGATCAGTTTTCGAGATGTCTCTATGTTGAATACAAGAGGAGTGGAATTGACGTTCAGTGTCAGGTTCCATTATATGTGGCAACCAAGATGGCATCAATCAGGAAATCTTCATTCTTTGTTCCATCAACAGATGGCTATGCCAAAGCAGGTGTGAAATGGATAGGCTATGAGCCTCGCTGCACACCATACTGGCCGCATACTCTTCTTTGGGCCGTGGCGTGCTCATTGCCTGAGTTTGTCGTCGATGCTTGGCGCCTGTGGTTTTGCTTGGGTATTCGAAAGAGGGGACAGCGCAAGGATTCCATGAAGAAGGAATAA 963 0.4849 MECCIISRLKTQPIWFALLFIVGLLTILKLAFVVLRWVYVNFLRPPKNLKKYGSWAVVTGPTDGIGKSFAFELARKGLNLVLVGRNPDKLKDVSDSIAARFGKTEVKTVVVDFFGDLDEGVKKISEAIQGLEVGVLVNNVGVSYPYARFFHEVDEGLLNNLIKLNVVGTTKVTQAVLPGMLKRKKGAIVNMGSGAAIVIPSDPLYAVYAATKAYIDQFSRCLYVEYKRSGIDVQCQVPLYVATKMASIRKSSFFVPSTDGYAKAGVKWIGYEPRCTPYWPHTLLWAVACSLPEFVVDAWRLWFCLGIRKRGQRKDSMKKE* 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g1521 320 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 131 142 IPR002347 -
Gso13g1521 320 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 186 194 IPR002347 -
Gso13g1521 320 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 208 227 IPR002347 -
Gso13g1521 320 PIRSF 11-beta-HSD1 4 314 - -
Gso13g1521 320 CDD 17beta-HSD1_like_SDR_c 53 295 - -
Gso13g1521 320 PRINTS Glucose/ribitol dehydrogenase family signature 55 72 IPR002347 -
Gso13g1521 320 PRINTS Glucose/ribitol dehydrogenase family signature 131 142 IPR002347 -
Gso13g1521 320 PRINTS Glucose/ribitol dehydrogenase family signature 180 196 IPR002347 -
Gso13g1521 320 PRINTS Glucose/ribitol dehydrogenase family signature 208 227 IPR002347 -
Gso13g1521 320 PRINTS Glucose/ribitol dehydrogenase family signature 229 246 IPR002347 -
Gso13g1521 320 PANTHER RH59310P 5 319 - -
Gso13g1521 320 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 53 311 IPR036291 -
Gso13g1521 320 Gene3D - 49 267 - -
Gso13g1521 320 PANTHER BETA-KETOACYL REDUCTASE 1-RELATED 5 319 - -
Gso13g1521 320 Pfam short chain dehydrogenase 55 247 IPR002347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g1521 Gso-Chr13 30658844 30661485 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso13g1521 1 320 Lipid Metabolism Gene Families AT1G67730 65.312 1.01e-166 464
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g1521 K10251 - gmx:100814139 638.647
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g0101 18 827573 834902 Gso13g1521 13 30658844 30661485 GST
Gso5g1432 5 37792474 37795938 Gso13g1521 13 30658844 30661485 PCT
Gso8g1055 8 9761208 9764196 Gso13g1521 13 30658844 30661485 PCT