Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g1516 ATGGAAATTCCAATTCCGCTCTCATTTATGTTACTCTTACTACTTGTACCTTCCTGCATTTGCTCTTCCCCACTTCAAGATCCTGAACTAGTGGTTGAAGATGTACAAAAGAGCATTAATGCCTCAAGGAGGAACTTAGCATTTCTTTCTTGTGGAACGGGGAACCCCATTGATGATTGTTGGAGATGTGACCCCAATTGGGAAAAGAACCGGAAGCGTCTAGCAGATTGTTCCATTGGGTTTGGTAAGCATGCCGTTGGGGGAAGGGATGGTAAAATATATGTGGTGACTGACCCCGGTGATCACCCTGTGAACCCCAAGCCAGGAACACTAAGATATGGTGTGATCCAAGAGGAGCCATTGTGGATCATATTCAAGCGTGACATGGTGATCAAGCTCAAGCAAGAGCTTATGATGAATTCTTTCAAGACAATTGACGGTAGAGGAGCAAGTGTGCACATTGCTGGTGGACCTTGCATCACTATACAGTATGTGACCAACATTATCATTCATGGGATTAACATCCATGACTGCAAGCAAGGAGGGAATGCCTATGTGAGGGATTCCCCTACACATTATGGGTGGAGGACACTCTCGGATGGTGATGGAGTGTCAATCTTTGGTGGGAGTCATGTTTGGGTGGACCACTGCTCTCTCTCCAATTGCCGTGATGGGTTAATTGATGCCATCCATGGATCCACAGGCATCACCATATCCAACAATTACTTGACCCACCATAACAAGGTCATGCTTTTGGGCCACAGTGACACTTTCACTAGGGACAAGAACATGCAAGTCACCATTGCCTTCAACCATTTTGGAGAAGGGCTAGTGCAGAGAATGCCAAGATGCAGGCATGGATACTTCCATGTGGTGAACAATGACTACACCCATTGGAGAATGTATGCCATAGGGGGGAGTGCTGCCCCAACTATCAATAGCCAAGGGAATAGATTTCTTGCTCCCAATGACAATACCTTCAAAGAGGTGACAAAGAGGGAGAATTCAGCACAGAGCAAGTGGAAGAATTGGAATTGGAGGTCAAGTGGAGATTTGATGTTAAACGGTGCGTTTTTTACGGCATCAGGAGCAGGTGCATCTTCAAGCTATGCAAGAGCATCTAGTTTGGCAGCAAAATCATCTTCACTTGTGAGTTCTATAACAGCATCAGCTGGATCACTTAGCTGCAGAAAGGGTTCACGCTGCTGA 1209 0.4591 MEIPIPLSFMLLLLLVPSCICSSPLQDPELVVEDVQKSINASRRNLAFLSCGTGNPIDDCWRCDPNWEKNRKRLADCSIGFGKHAVGGRDGKIYVVTDPGDHPVNPKPGTLRYGVIQEEPLWIIFKRDMVIKLKQELMMNSFKTIDGRGASVHIAGGPCITIQYVTNIIIHGINIHDCKQGGNAYVRDSPTHYGWRTLSDGDGVSIFGGSHVWVDHCSLSNCRDGLIDAIHGSTGITISNNYLTHHNKVMLLGHSDTFTRDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWRMYAIGGSAAPTINSQGNRFLAPNDNTFKEVTKRENSAQSKWKNWNWRSSGDLMLNGAFFTASGAGASSSYARASSLAAKSSSLVSSITASAGSLSCRKGSRC* 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g1516 402 PANTHER PECTATE LYASE 9 399 - -
Gso13g1516 402 SMART amb_all 128 325 IPR002022 -
Gso13g1516 402 PRINTS Pollen allergen Amb family signature 77 94 IPR018082 -
Gso13g1516 402 PRINTS Pollen allergen Amb family signature 100 125 IPR018082 -
Gso13g1516 402 PRINTS Pollen allergen Amb family signature 136 152 IPR018082 -
Gso13g1516 402 PRINTS Pollen allergen Amb family signature 200 221 IPR018082 -
Gso13g1516 402 PRINTS Pollen allergen Amb family signature 280 299 IPR018082 -
Gso13g1516 402 PRINTS Pollen allergen Amb family signature 302 321 IPR018082 -
Gso13g1516 402 PRINTS Pollen allergen Amb family signature 344 368 IPR018082 -
Gso13g1516 402 PRINTS Pollen allergen Amb family signature 373 396 IPR018082 -
Gso13g1516 402 Gene3D - 54 395 IPR012334 -
Gso13g1516 402 PANTHER PECTATE LYASE 18-RELATED 9 399 IPR045032 GO:0030570
Gso13g1516 402 SUPERFAMILY Pectin lyase-like 39 396 IPR011050 -
Gso13g1516 402 Pfam Pectate lyase 134 319 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g1516 Gso-Chr13 30613573 30615925 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso13g1516 7 402 Polysaccharide Lyase AT5G63180 77.723 0.0 640
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g1516 K01728 - gmx:100816256 788.489
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g0107 18 878198 880562 Gso13g1516 13 30613573 30615925 GST