Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g1515 ATGGCATTTTCATTCACATTTCTGTTCCAGTTCTTGCTTCTTGCCCCATCTGTGATCTATGCTTCTCCAGTTCAAGACCCTGAATTAGTGGTCCAGGAAGTGCAAAAGAGCATCAATGGATCAAGGAGAAACTTGGGGTATCTTTCTTGTGGAACAGGGAACCCCATTGATGATTGTTGGAGGTGTGACCCTAATTGGGAAAGAAACCGCAAGCGTTTAGCTAGTTGTGCAATTGGGTTTGGTAAGCATGCCATAGGTGGAAAAGATGGAAAAATATATGTGGTGACTGACTCTAGTGATAACCCTGTGAACCCGAAGCCAGGAACATTGAGACATGGCGTTATTCAACAAGAGCCATTGTGGATAATTTTCAAGCATGACATGGTGATCAAGCTACACAAGGATCTCTTAGTTAATTCTTACAAAACCATTGATGGAAGAGGAGCAACCATCCACATTGCTGGAGGAGGACCTTGCATTAGAGTGCACAAGAAGACCAATATCATAATCCATGGCATACACATCCATGATTGCAAAAGGGGTGGCAGTGGTTATGTGAGTGACTCTCCTAACCATCGTAGCTGGAGTGCGAGATCGGATGGTGATGGGATCACAATCTTTGGTGGGAGTCATATTTGGGTGGACCATTGCTCCTTGTCAAACTGTTTTGATGGCCTCATTGATGTTGTTCATGGCTCAACGGCCATCACCATTTCCAACAATTACATGATACACCATAACAAGGTCATGCTCTTGGGACACAGTGATTCCTATAAAGCTGACAAGAATATGCAAGTCACCATTGCCTTCAACCATTTTGGAGAAGGGCTTGGAGGAAGAATGCCGAGATGCAGGTTTGGATATTTCCATGTTGTGAACAATGATTACACACATTGGCAACATTATGCAATAGGTGGGAGTTCATCCCCAACTATTTTCAGCCAAGGCAATAGATTTCTTGCTCCAAATGATGATGACCACAAAGAGGTGACCAAACATTTTAAATCATCAAAGAGTGAGTGGAGGAAATGGAATTGGAGGTCTGAAGGAGATATAATGTTGAATGGTGCCTTCTTCACGCCGTCCGGAGCGGGGGCAACTGCTAGGTATGATAAAGCGTCAAGCATGGCAGCACGACCACCTATGCTTTTGTCTTACATGACAGCTGGGGCTGGAGCGCTTAGATGCAACAAGGGCAATCTATGCCACTAG 1212 0.4447 MAFSFTFLFQFLLLAPSVIYASPVQDPELVVQEVQKSINGSRRNLGYLSCGTGNPIDDCWRCDPNWERNRKRLASCAIGFGKHAIGGKDGKIYVVTDSSDNPVNPKPGTLRHGVIQQEPLWIIFKHDMVIKLHKDLLVNSYKTIDGRGATIHIAGGGPCIRVHKKTNIIIHGIHIHDCKRGGSGYVSDSPNHRSWSARSDGDGITIFGGSHIWVDHCSLSNCFDGLIDVVHGSTAITISNNYMIHHNKVMLLGHSDSYKADKNMQVTIAFNHFGEGLGGRMPRCRFGYFHVVNNDYTHWQHYAIGGSSSPTIFSQGNRFLAPNDDDHKEVTKHFKSSKSEWRKWNWRSEGDIMLNGAFFTPSGAGATARYDKASSMAARPPMLLSYMTAGAGALRCNKGNLCH* 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g1515 403 PANTHER PECTATE LYASE 18-RELATED 3 399 IPR045032 GO:0030570
Gso13g1515 403 Gene3D - 53 395 IPR012334 -
Gso13g1515 403 SMART amb_all 127 325 IPR002022 -
Gso13g1515 403 PRINTS Pollen allergen Amb family signature 76 93 IPR018082 -
Gso13g1515 403 PRINTS Pollen allergen Amb family signature 99 124 IPR018082 -
Gso13g1515 403 PRINTS Pollen allergen Amb family signature 135 151 IPR018082 -
Gso13g1515 403 PRINTS Pollen allergen Amb family signature 200 221 IPR018082 -
Gso13g1515 403 PRINTS Pollen allergen Amb family signature 280 299 IPR018082 -
Gso13g1515 403 PRINTS Pollen allergen Amb family signature 302 321 IPR018082 -
Gso13g1515 403 PRINTS Pollen allergen Amb family signature 344 368 IPR018082 -
Gso13g1515 403 PRINTS Pollen allergen Amb family signature 373 396 IPR018082 -
Gso13g1515 403 Pfam Pectate lyase 138 319 IPR002022 -
Gso13g1515 403 PANTHER PECTATE LYASE 3 399 - -
Gso13g1515 403 SUPERFAMILY Pectin lyase-like 37 396 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g1515 Gso-Chr13 30604970 30607761 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso13g1515 3 402 Polysaccharide Lyase AT5G63180 67.407 0.0 561
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g1515 K01728 - gmx:100801136 849.351
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g0108 18 888331 890910 Gso13g1515 13 30604970 30607761 GST